Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,463,031 | A→T | 17.4% | intergenic (‑100/+42) | algI ← / ← algL | alginate O‑acetylase AlgI/alginate lyase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,463,031 | 0 | A | T | 17.4% | 47.2 / 6.9 | 23 | intergenic (‑100/+42) | algI/algL | alginate O‑acetylase AlgI/alginate lyase |
Reads supporting (aligned to +/- strand): ref base A (11/8); new base T (2/2); total (13/10) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.33e-01 |
AGATCGGCAAGAACAGGAACAGGAACACGTTGGACGAGAAGACCATCCCGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCAGCCGGAAGCTGTTGAACGGCTGCATGTCGTGCTTGCGCTCAAGCGTGTCGCC > NC_002947/1462886‑1463177 | aGATCGGCAAGAACAGGAACAGGAACACGTTGGACGAGAAGACCATCCCGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGcc < 1:336879/150‑1 (MQ=255) gaacaggaacagGAACACGTTGGACGAGAAGACCATCCCGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCTTGCCCGCTcc < 2:338571/146‑1 (MQ=255) gaacaggaacagGAACACGTTGGACGAGAAGACCATCCCGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCTTGCCCGCTcc > 1:338571/1‑146 (MQ=255) caggaacaggaaCACGTTGGACGAGAAGACCATCCCGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGt < 2:21658/150‑1 (MQ=255) gaCCATCCCGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCa > 1:120883/1‑150 (MQ=255) aCCATCCCGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCAt < 2:120883/150‑1 (MQ=255) ccGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCAAGTGCACGACTGGAAGGACAAGGAGAGCCCTGGGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTg > 1:60057/1‑150 (MQ=255) ctcCTAATTTGTTCACAGCATCCAGGACAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGctctct < 2:58857/150‑1 (MQ=255) aGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGTGGTCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGa < 1:276174/150‑1 (MQ=255) ccAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCcgc > 2:177217/1‑150 (MQ=255) ggCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCGACAGGGTCCGCCCCCGCAAGGGGGGTCAAGTCATTTCTTGCTCTCTGCACACGGTGCGTAGACCCGCGTca > 1:271481/1‑150 (MQ=255) ccAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGTTCGTAGACCCGCGTcac < 1:100180/149‑1 (MQ=255) ccAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGGGGCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCAg > 1:34563/1‑150 (MQ=255) cAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCAGCCGGAAGCTg > 1:376337/1‑150 (MQ=255) aGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCa < 1:398159/74‑1 (MQ=255) aGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCa > 2:398159/1‑74 (MQ=255) cTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCAGCCGGAAGCCGTTGAACGGCTGCATGTCGTGCTTGCGCTCa > 1:347764/1‑150 (MQ=255) ttttggAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCAGCCGGAAGCTGTTGACCAGCTGCATGTCGTGCTTGCGCTCaa > 1:17408/5‑150 (MQ=255) tgtgGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCAGCCGGAAGCTGTTGAACGGCTGCATGTCGTGCTTGCGCTCaa > 1:27472/1‑150 (MQ=255) ggAGCGGGCTTGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCAGCCGGAAGCTGTTGAACGGCTGCATGTCGTGCTTGCGCTCAAGCgt < 2:186832/150‑1 (MQ=255) ggAGCGGGCTTGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCAGCCGGAAGCTGTTGAACGGCTGCATGTCGTGCTTGCGCTCAAGCgt > 1:186832/1‑150 (MQ=255) gAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCAGCCGGAAGCTGTTGAACGGCTGAATGTCGTGCTTGCGCTAAAGCgtg > 1:462006/1‑150 (MQ=255) ggCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCAGCCGGAAGCTGTTGAACGGCTGCATGTCGTGCTTGCGCTCAAGCGTGTCGcc < 2:27472/150‑1 (MQ=255) | AGATCGGCAAGAACAGGAACAGGAACACGTTGGACGAGAAGACCATCCCGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCAGCCGGAAGCTGTTGAACGGCTGCATGTCGTGCTTGCGCTCAAGCGTGTCGCC > NC_002947/1462886‑1463177 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |