Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,112,776 | G→C | 18.2% | P518R (CCG→CGG) ‡ | PP_1882 ← | membrane protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,112,776 | 0 | G | C | 18.2% | 49.0 / 7.1 | 22 | P518R (CCG→CGG) ‡ | PP_1882 | membrane protein |
Reads supporting (aligned to +/- strand): ref base G (11/7); new base C (2/2); total (13/9) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.34e-01 |
AGGGTCTAGCAGTGAATTGAACTGGTACTGGGTGGTGGTTTCCAGCTTGTTGCGTTTCACCACCTCCTGATAGCGACGGCCGTGCCGCAGGCTGGACTTGGGCGCATCGAGGTAATAGTAAATTTTCTCTTCCAGGGGATGCGCCGGATCGTGCGCATGCGTCAGGGTTTCACTGTGCTCGACAATCATCGGGTTGAGGGTGATGGCGTTGCCTGCCAGTGGCGCCAGCGCCTTGTAGCGGTAGTGCTGAGTGAGAACAGGGGCTTGCCCCCGGCCGCTGCTCGCCGGG > NC_002947/2112631‑2112919 | agGGTCTAGCAGTGAATTGAACTGGTACTGGGTGGTGGTTTCCAGCTTGTTGCGTTTCACCACCTCCTGATAGCGACGGCCGTGCCGCAGGCTGGACTTGGGCGCATCGAGGTAATAGTAAATTTTCTCTTCCAGGGGATGCGCCGGATc < 1:377920/150‑1 (MQ=255) tGAACTGGTACTGGGTGGTGGTTTCCAGCTTGTTGCGTTTCACCACCTCCTGATAGCGACGGCCGTGCCGCAGGCTGGACTTGGGCGCATCGAGGTAATAGTAAATTTTCTCTTCCAGGGGATGCGCCGGATCGTGCGCATGCGTCAggg > 1:63316/1‑150 (MQ=255) tggtggtTTCCAGCTTGTTGCGTTTCACCACCTCCTGATAGCGACGGCCGTGCCGCAAGCTGGACTTGGGCGCATCGAGGTAATAGTAAATTTTCTCTTCCAGGGGATGCGCCGGATCGTGCGCATGCGTCAGGGTTTCACTGTGCTCGa > 1:198983/1‑150 (MQ=255) ccAGCTTGTTGCGTTTCACCACCTCCTGATAGCGACGGCCGTGCCGCAGGCTGGACTTGGGCGCATCGAGGTAATAGTAAATTTTCTCTTCCAGGGGATGCGCCGGATCGTGCGCATGCGTCAGGGTTTCACTGTGCTCGACAATCATCg < 2:168421/150‑1 (MQ=255) cctcctGATAGCGACGGCCGTGCCGCAGGCTGGACTTGGGCGCATCGAGGTAATAGTAAATTTTCTCTTCCAGGGGATGCGCCGGATCGTGCGCATGCGTCAGGGTTTCACTGTGCTCGACAATCATCGGGTTGAGGGTGATGGCGTtgc > 2:449336/1‑150 (MQ=255) gCCGCAGGCTGGACTTGGGCGCATCGAGGTAATAGTAAATTTTCTCTTCCAGGGGATGCGCCGGATCGTGCGCATGCGTCAGGGTTTCACTGTGCTCGACAATCATCg > 2:175759/1‑108 (MQ=255) gCCGCAGGCTGGACTTGGGCGCATCGAGGTAATAGTAAATTTTCTCTTCCAGGGGATGCGCCGGATCGTGCGCATGCGTCAGGGTTTCACTGTGCTCGACAATCATCg < 1:175759/108‑1 (MQ=255) gCAGGCTGGACTTGGGCGCATCGAGGTAATAGTAAATTTTCTCTTCCAGGGGATGCGCCGGATCGTGCGCATGCGTCAGGGTTTCACTGTGCTCGACAATCATCGGGTTGAGGGTGATGGCGTTGCCTGCCAGTGGCGCCAGCGCCTTGt > 2:362387/1‑150 (MQ=255) gCTGGACTTGGGCGCATCGAGGTAATAGTAAATTTTCTCTTCCAGGGGATGCGCCGGATCGTGCGCATGCGTCAGGGTTTCACTGTGCTCGACAATCATCGGGTTGAGGGTGATGGCGTTGCCTGCCAGTGGCGCCAGCGCCTTGTAGCg > 2:129091/1‑150 (MQ=255) gCTGGACTTGGGCGCATCGAGGTAATAGTAAATTTTCTCTTCCAGGGGATGCGCCGGATCGTGCGCATGCGTCAGGGTTTCACTGTGCTCGACAATCATCGGGTTGAGGGTGATGGCGTTGCCTGCCAGTGGCGCCAGCGCCTTGTAGCg > 2:363445/1‑150 (MQ=255) gCTGGACTTGGGCGCATCGAGGTAATAGTAAATTTTCTCTTCCAGGGGATGCGCCGGATCGTGCGCATGCGTCAGGGTTTCACTGTGCTCGACAATCATCGGGTTGAGGGTGATGGCGTTGCCTGCCAGTGGCGCCAGCGCCTTGTAGCg > 1:223792/1‑150 (MQ=255) cgcATCGAGGTAATAGTAAATTTTCTCTTCCAGGGGATGCGCCGGATCGTGCGCATGCGTCAGGGTTTCACTGTGCTCGACAATCATCGGGTTGAGGGTGATGGCGTTGCCTGCCAGTGGCGCCAGCGCCTTGTAGCGGTAGTGCtgagt < 1:362387/150‑1 (MQ=255) aTCGCGGTAATAGTAAATTTTCTCTTCCAGGGGATGCGCCGGATCGTGCGCATGTTTCAGGGTTTCACTGTGCTCGACAACCATCGGGTTGAGGGTGATGGCGTTGCCTGCCAGTGGCGCCAGCGCCTTGTAGCGGTAGTGCtgagtgag > 2:438157/1‑150 (MQ=255) ggTAATAGTAAATTTTCTCTTCCAGGGGATGCGCCGGATCGTGCGCATGCGTCAGGGTTTCACTGTGCTCGACAATCATCGGGTTGAGGGTGATGGCGTTGCCTGCCAGTGGCGCCAGCGCCTTGTAGCGGTAGTGCTGAGTGAGAACAg < 1:363445/150‑1 (MQ=255) gTAATAGTAAATTTTCTCTTCCAGGGGATGCGCCGGATCGTGCGCATGCGTCAGGGTTTCACTGTGCTCGACAATCATCGGGTTGAGGGTGATGGCGTTGCCTGCCAGTGGCGCCAGCGCCTTGTAGCGGTAGTGCTGAGTGAGAACAgg < 2:63316/150‑1 (MQ=255) gTAAATTTTCTCTTCCAGGGGATGCGCCGGATCGTGCGCATGCGTCAGGGTTTCACTGTGCTCGACAATCATCGGGTTGAGGGTGATGGCGTTGCCTGCCAGTGGCGCCAGCGCCTTGTAGCGGTAGTGCTGAGTGAGAACAGGGGCTTg < 2:198983/150‑1 (MQ=255) cctgacgcATGCGCACGATCCGGCGCATGCGTCAGGGTTTCACTGTGCTCGACAATCATCGGGTTGAGGGTGATGGCGTTGCCTGCCAGTGgc > 1:386946‑M1/9‑93 (MQ=255) cctgacgcATGCGCACGATCCGGCGCATGCGTCAGGGTTTCACTGTGCTCGACAATCATCGGGTTGAGGGTGATGGCGTTGCCTGCCAGTGgc < 2:386946‑M1/85‑1 (MQ=255) ctgacgcATGCGCACGATCCGGCGCATGCGTCAGGGTTTCACTGTGCTCGACAATCATCGGGTTGAGGGTGATGGCGtt < 2:205950‑M1/72‑1 (MQ=255) ctgacgcATGCGCACGATCCGGCGCATGCGTCAGGGTTTCACTGTGCTCGACAATCATCGGGTTGAGGGTGATGGCGtt > 1:205950‑M1/8‑79 (MQ=255) aGGGGATGCGCCGGATCGTGCGCATGCGTCAGGGTTTCACTGTGCTCGACAATCATCGGGTTGAGGGTGATGGCGTTGCCTGCCAGTGGCGCCAGCGCCTTGTAGCGGTAGTGCTGAGTGGGAACAGGGGCTTGCCCCCGGCCGCTGCTc > 2:101957/1‑150 (MQ=255) TGCGCCGGATCGTGCGCATGCGTCAGGGTTTCACTGTGCTCGACAATCATCGGGTTGAGGGTGATGGCGTTGCCTGCCAGTGGCGCCAGCGCCTTGTAGCGGTAGTGCTGAGTGAGAACAGGGGCTTGCCCCCGGCCGCTGCTCGCCggg > 1:387345‑M1/1‑150 (MQ=255) | AGGGTCTAGCAGTGAATTGAACTGGTACTGGGTGGTGGTTTCCAGCTTGTTGCGTTTCACCACCTCCTGATAGCGACGGCCGTGCCGCAGGCTGGACTTGGGCGCATCGAGGTAATAGTAAATTTTCTCTTCCAGGGGATGCGCCGGATCGTGCGCATGCGTCAGGGTTTCACTGTGCTCGACAATCATCGGGTTGAGGGTGATGGCGTTGCCTGCCAGTGGCGCCAGCGCCTTGTAGCGGTAGTGCTGAGTGAGAACAGGGGCTTGCCCCCGGCCGCTGCTCGCCGGG > NC_002947/2112631‑2112919 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |