Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,514,934 | G→C | 25.0% | P166A (CCG→GCG) | phnX ← | phosphonoacetaldehyde hydrolase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,514,934 | 0 | G | C | 25.0% | 27.8 / 7.1 | 16 | P166A (CCG→GCG) | phnX | phosphonoacetaldehyde hydrolase |
Reads supporting (aligned to +/- strand): ref base G (5/7); new base C (2/2); total (7/9) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CCGAGCAGACCAGCGCCACGGTCCACATGCCGGCACGGCGGCCTTCAAGAATGCCAGGCACGGTGTCGTCCACCTTCACGCAGGCCGCTACATCGTCAATCCCCAGCGCAATCACGTTGGCCAAGGCCTGGGCCGGCCATGGGCGGCCGTTCGGGGTTTCATCGGTGGCCACTACATGGTCGGCCACGTAGCCGTTCTGCGCAGCCAGTTCCACCACCTTGTCCATCACCACTTTCGGGTAGCCCGAGCACGAGCCGATCTTCAGGCCGTCCTGGCGTAGACCGG > NC_002947/2514799‑2515083 | ccGAGCAGACCAGCGCCACGGTCCACATGCCGGCACGGCGGCCTTCAAGAATGCCAGGCACGGTGTCGTCCACCTTCACGCAGGCCGCTACATCGTCAATCCCCAGCGCAATCACGTTGGCCAAGGCCTGGGCCGGCCATGGGCGGCCGt > 2:485146/1‑150 (MQ=255) ggTCCACATGCCGGCACGGCGGCCTTCAAGAATGCCAGGCACGGTGTCGTCCACCTTCACGCAGGCCGCTACATCGTCAATCCCCAGCGCAATCACGTTGGCCAAGGCCTGGGCCGGCCATGGGCGGCCGTTCGGGGTTTCATCGGTGGc < 1:315962/150‑1 (MQ=255) acaTGCCGGCACGGCGGCCTTCAAGAATGCCAGGCACGGTGTCGTCCACCTTCACGCAGGCCGCTACATCGTCAATCCCCAGCGCAATCACGTTGGCCAAGGCCTGGGCCGCCCATggccggcccag < 2:91239/127‑4 (MQ=255) acaTGCCGGCACGGCGGCCTTCAAGAATGCCAGGCACGGTGTCGTCCACCTTCACGCAGGCCGCTACATCGTCAATCCCCAGCGCAATCACGTTGGCCAAGGCCTGGGCCGCCCATggccggcccag > 1:91239/1‑124 (MQ=255) ccGGCACGGCGGCCTTCAAGAATGCCAGGCACGGTGTCGTCCACCTTCACGCAGGCCGCTACATCGTCAACCCCCAAGGCGATCACGTTGTGCAAGGCCTGGGCCGGCCATGGGCGGCCGTTCGGGGTTTCATCGGTGGCCACTACATgg < 1:306038/150‑1 (MQ=255) ggCACGGCGGCCTTCAAGAATGCCAGGCACGGTGTCGTCCACCTTCACGCAGGCCGCTACATCGTCAATCCCCAGCGCAATCACGTTGGCCAAGGCCTGGGCCGGCCATGGGCGGCCGTTCGGGGTTTCATCGGTGGCCACTACATGGTc < 1:485146/150‑1 (MQ=255) cAAGAATGCCAGGCACGGTGTCGTCCACCTTCACGCAGGCCGCTACATCGTCAATCCCCAGCGCAATCACGTTGGCCAAGGCCTGGGCCGGCCATGGGCGGCCGTTCGGGGTTTCATCGGTGGCCACTACATGGTCGGCCACGTAGCCGt < 1:483646/150‑1 (MQ=255) gtgtCGTCCACCTTCACGCAGGCCGCTACATCGTCAATCCCCAGCGCAATCACGTTGGCCAAGGCCTGGGCCGGCCATGGGCGGCCGTTCGGGGTTTCATCGGTGGCCACTACATGGTCGGCCACGTAGCCGTTCTGCGCAGCCAGTTcc < 2:349261/150‑1 (MQ=255) cGCAGGCCGCTACATCGTCAATCCCCAGCGCAATCACGTTGGCCAAGGCCTGGGCCGGCCATGGGCGGCCGTTCGGGGTTTCATCGGTGGCCACTACATGGTc > 1:391307/1‑103 (MQ=255) cGCAGGCCGCTACATCGTCAATCCCCAGCGCAATCACGTTGGCCAAGGCCTGGGCCGGCCATGGGCGGCCGTTCGGGGTTTCATCGGTGGCCACTACATGGTc < 2:391307/103‑1 (MQ=255) gCCGCTACATCGTCAATCCCCAGCGCAATCACGTTGGCCAAGGCCTGGGCCGCCCATggccggccc > 2:111652/1‑65 (MQ=39) gCCGCTACATCGTCAATCCCCAGCGCAATCACGTTGGCCAAGGCCTGGGCCGCCCATggccggccc < 1:111652/66‑2 (MQ=39) aaTCCCCAGCGCAATCACGTTGGCCAAGGCCTGGGCCGGCCATGGGCGGCCGTTCGGGGTTTCATCGGTGGCCACTACATGGTCGGCCACGTAGCCGTTCTGCGCAGCCAGTTcc < 2:372531/115‑1 (MQ=255) aaTCCCCAGCGCAATCACGTTGGCCAAGGCCTGGGCCGGCCATGGGCGGCCGTTCGGGGTTTCATCGGTGGCCACTACATGGTCGGCCACGTAGCCGTTCTGCGCAGCCAGTTcc > 1:372531/1‑115 (MQ=255) tGGCCAAGGCCTGGGCCGGCCATGGGCGGCCGTTCGGGGTTTCATCGGTGGCCACTACATGGTCGGCCACGTAGCCGTTCTGCGCAGCCAGTTCCACCACCTTGTCCATCACCACTTTCGGGTAGCCCGAGCACGAGCCGATCTTCAGGc > 2:365896/1‑150 (MQ=255) aaGGCCTGGGCCGGCCATGGGCGGCCGTTCGGGGTTTCATCGGTGGCCACTACATGGTCGGCCACGTAGCCGTTCTGCGCAGCCAGTTCCACCACCTTGTCCATCACCACTTTCGGGTAGCCCGAGCACGAGCCGATCTTCAGGCCGTcc > 2:480805/1‑150 (MQ=255) gccATGGGCGGCCGTTCGGGGTTTCATCGGTGGCCACTACATGGTCGGCCACGTAGCCGTTCTGCGCAGCCAGTTCCACCACCTTGTCCATCACCACTTTCGGGTAGCCCGAGCACGAGCCGATCTTCAGGCCGTCCTGGCGTAGACCgg > 2:5726/1‑150 (MQ=255) | CCGAGCAGACCAGCGCCACGGTCCACATGCCGGCACGGCGGCCTTCAAGAATGCCAGGCACGGTGTCGTCCACCTTCACGCAGGCCGCTACATCGTCAATCCCCAGCGCAATCACGTTGGCCAAGGCCTGGGCCGGCCATGGGCGGCCGTTCGGGGTTTCATCGGTGGCCACTACATGGTCGGCCACGTAGCCGTTCTGCGCAGCCAGTTCCACCACCTTGTCCATCACCACTTTCGGGTAGCCCGAGCACGAGCCGATCTTCAGGCCGTCCTGGCGTAGACCGG > NC_002947/2514799‑2515083 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |