Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,531,947 | T→A | 21.0% | A53A (GCT→GCA) | PP_2222 → | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,531,947 | 0 | T | A | 21.0% | 40.0 / 5.8 | 19 | A53A (GCT→GCA) | PP_2222 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base T (9/6); new base A (2/2); total (11/8) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.72e-01 |
TCGATGTGGCTGTGATGATAGGGTCGGGTGTGCCGGCCACCTTGCAGGCGCTGGGCAAGCGTATTTGCTGGGTAGTGCTGGTCAATGGCGAGCGTCGCGGCACCGCCTTCGCCACGCGCGAAGAAGCGCTTGAGTGCCAGGCTGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCC > NC_002947/2531805‑2532089 | tCGATGTGGCTGTGATGATAGGGTCGGGTGTGCCGGCCACCTTGCAGGCGCTGGGCAAGCGTATTTGCTGGGTAGTGCTGGTCAATGGCGAGCGTCGCGGCACCGCCTTCGCCACGCGCGAAGAAGCGCTTGAGTGCCAGGCAGc < 1:180436/145‑1 (MQ=255) cGATGTGGCTGTGATGATAGGGTCGGGTGTGCCGGCCACCTTGCAGGCGCTGGGCAAGCGTATTTGCTGGGTAGTGCTGGTCAATGGCGAGCGTCGCGGCACCGCCTTCGCCACGCGCGAAGAAGCGCTTGAGTGCCAGGCTGCCTGgca < 1:133707/150‑1 (MQ=255) gATGTGGCTGTGATGATAGGGTCGGGTGTGCCGGCCACCTTGCAGGCGCTGGGCAAGCGTATTTGCTGGGTAGTGCTGGTCAATGGCGAGCGTCGCGGCACCGCCTTCGCCACGCGCGAAGAAGCGCTTGAGTGCCAGGCTGCCTGgcag > 2:54905/1‑150 (MQ=255) tgtgATGATAGGGTCGGGTGTGCCGGCCACCTTGCAGGCGCTGGGCAAGCGTATTTGCTGGGTAGTGCTGGTCAATGGCGAGCGTCGCGGCACCGCCTTCGCCGCGCGCGAAGAAGCGCTTGAGTGCCAGGCTGCCTGGCAGCAGCAGCt > 1:40972/1‑150 (MQ=255) tgatgaTAGGGTCGGGTGTGCCGGCCACCTTGCAGGCGCTGGGCAAGCGTATTTGCTGGGTAGTGCTGGTCAATGGCGAGCGTCGCGGCACCGCCTTCGCCACGCGCGAAGAAGCGCTTGAGTGCCAGGCTGCCTGGCAGCAGCAGCTga > 1:275074/1‑150 (MQ=255) gCCGGCCACCTTGCAGGCGCTGGGCAAGCGTATTTGCTGGGTAGTGCTGGTCAATGGCGAGCGTCGCGGCACCGCCTTCGGCACGCGCGAAGAAGCGCTTGAGTGCCAGGCAGCCTGgcactcaag > 1:155818/1‑120 (MQ=255) gCCGGCCACCTTGCAGGCGCTGGGCAAGCGTATTTGCTGGGTAGTGCTGGTCAATGGCGAGCGTCGCGGCACCGCCTTCGCCACGCGCGAAGAAGCGCTTGAGTGCCAGGCAGCCTGgcactcaag < 2:155818/126‑7 (MQ=255) gCAAGCGTATTTGCTGGGTAGTGCTGGTCAATGGCGAGCGTCGCGGCACCGCCTTCGCCACGCGCGAAGAAGCGCTTGAGTGCCAGGCTGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACg > 1:56983/1‑150 (MQ=255) tGCTGGGTAGTGCTGGTCAATGGCGAGCGTCGCGGCACCGCCTTCGCCGCGCGCGAAGAAGCGCTTGAGTGCCAGGCTGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGgtgt < 2:40972/150‑1 (MQ=255) cTGGGTAGTGCTGGTCAATGGCGAGCGTCGCGGCACCGCCTTCGCCACGCGCGAAGAAGCGCTTGAGTGCCAGGCTGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGttt < 2:275074/150‑1 (MQ=255) tGGGTAGTGCTGGTCAATGGCGAGCGTCGCGGCACCGCCTTCGCCACGCGCGAAGAAGCGCTTGAGTGCCAGGCTGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGtttt < 1:54905/150‑1 (MQ=255) ggTAGTGCTGGTCAATGGCGAGCGTCGCGGCACCGCCTTCGCCACGCGCGAAGAAGCGCTTGAGTGCCAGGCTGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGttt > 1:389268/1‑120 (MQ=255) ggTAGTGCTGGTCAATGGCGAGCGTCGCGGCACCGCCTTCGCCACGCGCGAAGAAGCGCTTGAGTGCCAGGCTGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGttt < 2:389268/120‑1 (MQ=255) tGGTCAATGGCGAGCGTCGCGGCAGCGCCTTCGCCACGCGCGAAGAAGCGCTTGAGTGCCAGGATACTTGACAACAGAAGCTGAAGAAAAGTCTGGCTGCCTGAAAATGTTTATTCCCTCTCGACGGGGTTGGGTGTTTTCggttgtatt > 2:211754/1‑143 (MQ=255) gTCAATGGCGAGCGTCGCGGCACCGCCTTCGCCACGCGCGAAGAAGCGCTTGAGTGCCAGGCTGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTg > 2:104049/1‑150 (MQ=255) tCAATGGCGAGCGTCGCGGCACCGCCTTCGCCACGCGCGAAGAAGCGCTTGAGTGCCAGGCTGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGt > 2:216616/1‑150 (MQ=255) ttCGCCACGCGCGAAGAAGCGCTTGAGTGCCAGGCTGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTc < 2:344870/125‑1 (MQ=255) ttCGCCACGCGCGAAGAAGCGCTTGAGTGCCAGGCTGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTc > 1:344870/1‑125 (MQ=255) gCCAGGCAGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGcc > 1:416340/1‑150 (MQ=255) | TCGATGTGGCTGTGATGATAGGGTCGGGTGTGCCGGCCACCTTGCAGGCGCTGGGCAAGCGTATTTGCTGGGTAGTGCTGGTCAATGGCGAGCGTCGCGGCACCGCCTTCGCCACGCGCGAAGAAGCGCTTGAGTGCCAGGCTGCCTGGCAGCAGCAGCTGAAGAAAGGGCTGGCTGCCTGAAAATGTTTATTGCCTCTCGACGGGTTTCGGTGTTTTCGGGCATATTTGTCCTACAGTAATGCGCACATGGATGCCAGGGCTTGTCTTCTAGCAGGCTCACGCC > NC_002947/2531805‑2532089 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |