| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5640320 | 25 (0.560) | 11 (0.330) | 9/206 | 2.7 | 29.0% | intergenic (+41/‑69) | PP_4950/PP_4951 | hypothetical protein/EmrB/QacA family drug resistance transporter |
| ? | NC_002947 | = 5640336 | 35 (1.050) | intergenic (+57/‑53) | PP_4950/PP_4951 | hypothetical protein/EmrB/QacA family drug resistance transporter | |||||
CCAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAG > NC_002947/5640174‑5640466 | ccAGGAGCGCGAGATGGTCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAgg > 2:323728/1‑150 (MQ=255) ggAGCGCGAGATGGTCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAAc < 1:323728/150‑1 (MQ=255) ggAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAAc > 2:346081/1‑150 (MQ=255) gagaTGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAggggttacgcgtt > 2:959529‑M1/1‑137 (MQ=255) gagaTGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAAc > 1:860882/1‑150 (MQ=255) gatCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAAccc > 2:916218/1‑147 (MQ=255) gatCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAAccc < 1:916218/147‑1 (MQ=255) tCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAggggttacgcgttccttgta > 2:1055959‑M1/1‑130 (MQ=255) ccTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTGCAGCGATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCtgtag > 1:815685‑M2/1‑145 (MQ=255) gTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAggggttacgcgttccttgtaggag < 1:734082‑M1/150‑25 (MQ=255) tCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAggggttacgcgttccttgtaggagc < 1:1055959‑M1/150‑26 (MQ=255) tCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAggggttacgcgttccttgtaggagc < 1:959529‑M1/150‑26 (MQ=255) aCCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCtgtaggagcggc > 2:860882‑M2/1‑138 (MQ=255) gTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACGTTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAggggttacgcgttccttgta < 2:271510‑M1/138‑21 (MQ=255) gTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACGTTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAggggttacgcgttccttgta > 1:271510‑M1/1‑118 (MQ=255) aCAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCtgtaggagcggctttagccgcgaaag > 1:346081‑M2/1‑124 (MQ=255) cGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGCCGATTTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGa < 1:337346/150‑1 (MQ=255) aGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGa > 1:1004492/1‑150 (MQ=255) tCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAggggttacgcgttccttgtagga > 2:955938‑M1/1‑87 (MQ=255) tCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAggggttacgcgttccttgtagga < 1:955938‑M1/110‑24 (MQ=255) tttGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATGGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGGAACGTAATCATCGGAAGGGCCGGGCCTGACAAACGAGGACg > 2:622057/1‑150 (MQ=255) cGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTCACCCCTATAGGAACGGCTTTACCAGCAGAAGGGCCCGCCCTGACAAACAAGGActtaacgc > 1:439490/1‑143 (MQ=255) aCTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAggggttacgcgttccttgtaggag > 1:505645‑M1/1‑72 (MQ=255) aCTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAggggttacgcgttccttgtaggag < 2:505645‑M1/96‑25 (MQ=255) tGGTCAAAGGCCTGACCCTCACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCtgtaggagcgg < 2:131175‑M2/97‑12 (MQ=255) tGGTCAAAGGCCTGACCCTCACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCtgtaggagcgg > 1:131175‑M2/1‑86 (MQ=255) aGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGc > 2:2376/1‑150 (MQ=255) ctgaccctgacATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCGCTCACTGACAAACGAGGACGTCCTGCCCGAACGCACCCCGCCGGa > 1:764286/1‑150 (MQ=38) ctgaccctgacATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGa > 1:79825/1‑150 (MQ=255) ctgaccctgacATTGTGACTGGAATTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCGGTCGCGGACAACTGAGGACGTCATGCCCGGAGGCTCCCCGCTGGa > 2:337530/1‑150 (MQ=37) tgaccctgacATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGAc < 2:1004492/150‑1 (MQ=255) ccctgacATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAGGGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGAcccc < 2:635337/150‑1 (MQ=255) tgacATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGGGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAAGACGTCATGCCCGCAAGGACCCCGCTGGACCCCGTc > 1:55393/1‑150 (MQ=38) tGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCtgtaggagc < 2:728682‑M2/65‑10 (MQ=255) tGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCtgtaggagc > 1:728682‑M2/1‑56 (MQ=255) aCTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATc < 2:79825/150‑1 (MQ=255) ggCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTggg > 1:905364/1‑150 (MQ=255) cTTTCGCGGCTAAAGCCGCTCCTACAggggttacgcgttccttgtaggagcggctttagccgcgaaagggccggcaagtccagtcacaatgtcagggtcaggcctttgaccagtgccccgggcaaatgactcgacccggtactgcgctgt > 1:346081‑M1/1‑26 (MQ=255) tttCGCGGCTAAAGCCGCTCCTACAAGCAACGCGTACCCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGgtggtg < 2:439490/150‑1 (MQ=255) tttCGCGGCTAAAGCCGCTCCGACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGgtggtg > 1:296573/1‑150 (MQ=255) atctgCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGGGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCcttc < 1:231639/146‑1 (MQ=255) gCCGCTCCTACAggggttacgcgttccttgtaggagcggctttagccgcgaaagggccggcaagtccagtcacaatgtcagggtcaggcctttgaccagtgccccgggcaaatgactcgacccggtactgcgctgtccataagtactggt > 2:860882‑M1/1‑12 (MQ=255) ccGCTCCTACAggggttacgcgttccttgtaggagcggctttagccgcgaaagggccggcaagtccagtcacaatgtgagggtcaggcctttgacca > 1:131175‑M1/1‑11 (MQ=255) ccGCTCCTACAggggttacgcgttccttgtaggagcggctttagccgcgaaagggccggcaagtccagtcacaatgtgagggtcaggcctttgacca < 2:131175‑M1/97‑87 (MQ=255) gCTCCTACAggggttacgcgttccttgtaggagcggctttagccgcgaaagggccggcaagtcca > 1:728682‑M1/1‑9 (MQ=255) gCTCCTACAggggttacgcgttccttgtaggagcggctttagccgcgaaagggccggcaagtcca < 2:728682‑M1/65‑57 (MQ=255) gCTCCTACAAGGAACGCGTAACCCCtgtaggagcggctttagccgcgaaagggccggcaagtccagtcacaatgtcagggtcaggcctttgaccagtgccccgggcaaatgactcgacccggtactgcgctgtccataagtactggtcga < 1:1055959‑M2/150‑126 (MQ=255) gCTCCTACAAGGAACGCGTAACCCCtgtaggagcggctttagccgcgaaagggccggcaagtccagtcacaatgtcagggtcaggcctttgaccagtgccccgggcaaatgactcgacccggtactgcgctgtccataagtactggtcga < 1:959529‑M2/150‑126 (MQ=255) cTCCTACAAGGAACGCGTAACCCCtgtaggagcggctttagccgcgaaagggccggcaagtccagtcacaatgtcagggtcaggcctttgaccagtgccccgggcaaatgactcgacccggtactgcgctgtccataagtactggtcgac < 1:734082‑M2/150‑127 (MQ=255) cTCCTACAAGGAACGCGTAACCCCtgtaggagcggctttagccgcgaaagggccggcaagtccagtcacaatgtcagggtcaggcctttgaccagt < 2:505645‑M2/96‑73 (MQ=255) cTCCTACAAGGAACGCGTAACCCCtgtaggagcggctttagccgcgaaagggccggcaagtccagtcacaatgtcagggtcaggcctttgaccagt > 1:505645‑M2/1‑24 (MQ=255) tCCTACAAGGAACGCGTAACCCCtgtaggagcggctttagccgcgaaagggccggcaagtccagtcacaatgtcagggtcaggcctttgaccagtgccccgggcaaatga < 1:955938‑M2/110‑88 (MQ=255) tCCTACAAGGAACGCGTAACCCCtgtaggagcggctttagccgcgaaagggccggcaagtccagtcacaatgtcagggtcaggcctttgaccagtgccccgggcaaatga > 2:955938‑M2/1‑23 (MQ=255) tCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATg > 2:1037961/1‑150 (MQ=255) cTACAggggttacgcgttccttgtaggagcggctttagccgcgaaagggccggcaagtccagtcacaatgtcagggtcaggcctttgaccagtgccccgggcaaatcgctgcacccggtactgcgctgtccataagtactggtcgacagg > 1:815685‑M1/1‑5 (MQ=255) tACAAGGAACGCGTAACCCCtgtaggagcggctttagccgcgaaagggccggcaagtccagtcacaatgtcagggtcaggcctttgaccagtgccccgggcaaatgactcgacccggtactgcgctgtccataagtactggtcgacagga > 2:1055959‑M2/1‑20 (MQ=255) tACAAGGAACGCGTAACCCCtgtaggagcggctttagccgcgaaagggccggcaagtccagtcacaacgtcagggtcaggcctttgaccagtgccccgggcaaatgactcgacccggtactgcgctgtccataagtac > 1:271510‑M2/1‑20 (MQ=255) tACAAGGAACGCGTAACCCCtgtaggagcggctttagccgcgaaagggccggcaagtccagtcacaacgtcagggtcaggcctttgaccagtgccccgggcaaatgactcgacccggtactgcgctgtccataagtac < 2:271510‑M2/138‑119 (MQ=255) tACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATccc < 1:165777/119‑1 (MQ=255) tACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATccc > 2:165777/1‑119 (MQ=255) | CCAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAG > NC_002947/5640174‑5640466 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |