New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5816927	34 (0.760)	16 (0.410)	13/238	2.3	33.1%	intergenic (+57/+72)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
	?	NC_002947	= 5816954	35 (0.910)					intergenic (+84/+45)	PP_5092/pilT	NLP/P60 protein/twitching motility protein

TGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAAC  >  NC_002947/5816818‑5817098                                                                                                                                         |                                                                                                                                                 tggCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACAtacctgtgggagc                                                                                                                                     <  2:190073‑M2/150‑14 (MQ=255)    ccgaGCTGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCggg                                                                                                                                  <  2:652790/147‑1 (MQ=255)     cAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAACGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACAtacctgtgggagcgggc                                                                                                                                 <  2:932604‑M2/150‑18 (MQ=255)                tgcCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACAGGCCCCTTCGCGGTCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGTGCAGCTCACATACCTGTCGGAGCAGGCGCGCCCGCGaa                                                                                                                      >  2:191911/1‑150 (MQ=39)                 gcCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGaaa                                                                                                                     <  2:707601/150‑1 (MQ=255)                  ccGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAg                                                                                                                    <  1:281246/150‑1 (MQ=255)                   cGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAgg                                                                                                                   <  2:116126/150‑1 (MQ=255)                    gAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCACGCGCAGCTCACACACCTGTGGGCGCGGGCGCGCCCGCGAAAggg                                                                                                                  >  1:166796/1‑150 (MQ=255)                     aaaGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGc                                                                                                                 <  1:190073/150‑1 (MQ=255)                                gcTGAGTCTGGCCAAACGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGta                                                                                                      <  1:932604/150‑1 (MQ=255)                                   gAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGtacta                                                                                                   <  1:857273/150‑1 (MQ=255)                                      tCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACaa                                                                                                >  1:785656/1‑150 (MQ=255)                                             aaGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTg                                                                                         >  2:969619/1‑150 (MQ=255)                                              aGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGa                                                                                        <  1:319699/150‑1 (MQ=255)                                              aGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGa                                                                                        <  1:301292/150‑1 (MQ=255)                                              aGCGTTAAGCTGATCGGCGCTATCCGGGGCCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAATGGCCTTTGCAGGTACTACAAGCCTTTGa                                                                                        >  1:787687/1‑150 (MQ=255)                                               gCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGAt                                                                                       <  1:974265/150‑1 (MQ=255)                                                 gTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCCCTCCCACAGGTAGCCCGTCCCGGCCGGGCCCAGCTCACCTCCCTACGGGGTGGGTTGTGCCCGCGGAAGGGCCTTTGCAGGCACTACACGTGTTTGATcg                                                                                     >  1:241714/1‑149 (MQ=255)                                                   tAAGCTGATCGGCGCTATCCGGTACCGGCCTCTTCGCGGGCTCGCCCGCTATCACGGGTAGCGCGTCGCTCCCTCCCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAAc                                                                                   <  2:787687/150‑1 (MQ=255)                                                   tAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAAc                                                                                   <  2:785656/150‑1 (MQ=255)                                                     aGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACAtacctgtgggagcgg                                                                                                                                   <  1:175105‑M2/100‑16 (MQ=255)                                                     aGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACAtacctgtgggagcgg                                                                                                                                   >  2:175105‑M2/1‑85 (MQ=255)                                                        tGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCg                                                                              >  1:803619/1‑150 (MQ=255)                                                               cgcTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTc                                                                       <  1:969619/150‑1 (MQ=255)                                                                       ggTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAACACTTTGATGAACCCTCGCTCCATCCGCTTCCg                                                               >  1:161530/1‑150 (MQ=38)                                                                              gCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGGCGGTGTCGCGCGCAGCTCGCAtacctgttggagcgggcgcgcccgcgaagggaccggtaccggatagcggggatcggcttagcgcttggccggactcagctgctgctcttt                                                        <  1:872408‑M2/150‑91 (MQ=255)                                                                                cccTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGGTCTCGTGCGCAGCTCACATACCTGTGGGAACGGGCGCGCCCGCCAACGGGCCTTTGCAGGTACTACAAACCTTTGATCAACCCTCCCTCCCTCAGCCTCCGCAACGctcc                                                      >  1:81401/1‑150 (MQ=38)                                                                                cccTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCtt                                                                                           <  1:1066175/113‑1 (MQ=255)                                                                                cccTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCtt                                                                                           >  2:1066175/1‑113 (MQ=255)                                                                                         ggCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGt                                             >  2:441813/1‑150 (MQ=255)                                                                                           cACGCCCGCTCCCGCAGGTAGGGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCa                                           <  2:166796/150‑1 (MQ=255)                                                                                           cACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCa                                           <  2:822914/150‑1 (MQ=255)                                                                                              gCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTAGGAGCGGGCGCGCCCGCGACAGGGCCTTTGCCGGTACTACCAACCTTTCACCAACCCTCGCTCCCTCAGCCTCCGCAACACCCCCTCCATCGTCAACa                                        >  2:424685/1‑150 (MQ=255)                                                                                                 cGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACAtacctgtgggagcgggcgtgcccgcgaaggggccggtaccggatagcgccgatcagcttaacgcttggccagactcagctgctgctctttcggcagcacccgcttggcc                                     <  2:341285‑M2/150‑110 (MQ=255)                                                                                                  gCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATAGTCAGCATccc                                    >  1:468459/1‑150 (MQ=255)                                                                                                    tCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACAtacctgtgggagcgggcgtgcccgcgaaggggccggtaccggatagcgccgatcagcttaacgcttggccgtactcagctgctgctctttcggcagcacccgcttggccacc                                  <  1:548687‑M2/150‑113 (MQ=255)                                                                                                      ccACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACAtacctgtgggagcgggcgtgcccgcgaaggggccggtaccggatagcgccgatcagcttaacgcttggccagactcagctgctgctctttcggcagcacccgcttggccaccac                                <  2:301846‑M2/150‑115 (MQ=255)                                                                                                      ccACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACAtacctgtgggagcgggcgtgcccgcgaaggggccggtaccggatagcgccgatcagcttaacgcttggccagactcagctgctgctctttcggcagcacccgcttggccaccac                                <  1:314389‑M2/150‑115 (MQ=255)                                                                                                      ccACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACAtacctgtgggagcgggcgtgcccgcgaaggggccggtaccggatagcgccgatcagcttaacgcttggccagactcagctgctgctctttc                                                       <  1:680841‑M2/127‑92 (MQ=255)                                                                                                      ccACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACAtacctgtgggagcgggcgtgcccgcgaaggggccggtaccggatagcgccgatcagcttaacgcttggccagactcagctgctgctctttc                                                       >  2:680841‑M2/1‑36 (MQ=255)                                                                                                      ccACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACAtacctgtgggagcgggcgtgcccgcgaaggggccggtaccggatagcgccaatcagcttaacgcttggccagactcagctgctgctctttcggcagcacccgcttggccaccac                                <  2:556062‑M2/150‑115 (MQ=255)                                                                                                       cacaGGTAGCGCGTCGCTCTCGCGCGCAGCTCACAtacctgtgggagcgggcgcgcccgcgaaagggccggtaccggatagcgccgatcagcttaacgcttggccagactcagctgctgctctttcggcagcacccgcttggccaccacg                               <  1:897366‑M2/150‑116 (MQ=255)                                                                                                         caGGTAGCGCGTCGCTCTCGCGCGCAGCTCACAtacctgtgggagcgggcgtgcccgcgaaggggccggtaccggatagcgccgatcagcttaacgcttggccagactcagctgctgctctttcggcagcacccgcttggccaccacgta                             >  1:301846‑M2/1‑33 (MQ=255)                                                                                                          aGGTAGCGCGTCGCTCTCGCGCGCAGCTCACAtacctgtgggagcgggcgcgcccgcgaaagggccggtaccggatagcgccgatcagcttaacgcttggccagactcagctgctgctctttcggcagcacccgcttggccaccacgtag                            >  2:897366‑M2/1‑32 (MQ=255)                                                                                                            gTAGCGCGTCGCTCTCGCGCGCAGCTCACAtacctgtgggagcgggcgtgcccgcgaaggggccggtaccggatagcgccgatcagc                                                                                         >  2:582475‑M2/1‑30 (MQ=255)                                                                                                            gTAGCGCGTCGCTCTCGCGCGCAGCTCACAtacctgtgggagcgggcgtgcccgcgaaggggccggtaccggatagcgccgatcagc                                                                                         <  1:582475‑M2/87‑58 (MQ=255)                                                                                                             tAGCGCGTCGCTCTCGCGCGCAGCTCACAtacctgtgggagcgggcgtgcccgcgaaggggccggtaccggatagcgccgatcagcttaacgcttggccagactcagctgctgctctttcggcagcacccgcttggcaaccacgtagtgc                         >  2:314389‑M2/1‑29 (MQ=255)                                                                                                               gcgcGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCCTCCCCTCCGccgccccc                       >  2:594187/1‑149 (MQ=255)                                                                                                               gcgcGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGccgccccc                       >  2:594189/1‑149 (MQ=255)                                                                                                                 gcgTCGCTCTCGCGCGCCGCTCCCAtacctgtgtgagcacgcgtgtccgcttctggtccgggaccggatatcgccgatcagcttaacgcttggccagactcagctgctgctctttcggcagcacccgcttggccaccacgtagtgcttct                     >  2:548687‑M2/1‑25 (MQ=255)                                                                                                                 gcgTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGccgccccgcc                     <  1:441813/150‑1 (MQ=255)                                                                                                                        tctcGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATc              >  2:808906/1‑150 (MQ=255)                                                                                                                           cgcgcgCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACt           <  2:803619/150‑1 (MQ=255)                                                                                                                           cgcgcgCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCCCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACt           <  1:191911/150‑1 (MQ=255)                                                                                                                                gcAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGa      <  2:81401/150‑1 (MQ=255)                                                                                                                                    cTCACAtacctgtgggagcgggcgtgcccgcgaaggggccggtaccggatagcgccaatcagcttaacgcttggccagactcagctgctgctctttcggcagcacccgcttggccaccacgtagtgcttctgccagtaaggcttgctcaa  >  1:556062‑M2/1‑6 (MQ=255)                                                                                                                                         |                                                                                                                                                 TGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAAC  >  NC_002947/5816818‑5817098

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.