New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2379610 =	19 (0.860)	4 (0.190)	4/250	NT	17.2%	intergenic (+22/‑68)	cmpX/PP_2088	protein CmpX/RNA polymerase sigma factor SigX
	?	NC_002947	2379652 =	20 (0.930)					intergenic (+64/‑26)	cmpX/PP_2088	protein CmpX/RNA polymerase sigma factor SigX

GTCAATGTCGCCGCGCGACCCCGTGGGTCGAATTTCGCGGCGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2379655‑2379610 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCATGAGG  >  NC_002947/2379652‑2379759                                                                                                                                                            GTCAATGTCGCCGCGCGACCCCGTGGGTCGAATTTCGCGGCGGCATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCAT      >  2:351311/1‑150    AATGTCGCCGCGCGACCCCGTGGGTCGAATTTCGCGGCGGCATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTC                                                                   <  1:450600/86‑1    AATGTCGCCGCGCGACCCCGTGGGTCGAATTTCGCGGCGGCATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTC                                                                   >  2:450600/1‑86     ATGTCGCCGCGCGACCCCGTGGGTCGAATTTCGCGGCGGCATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCATGAGG  >  1:510286/1‑150                                                                                                                                                            GTCAATGTCGCCGCGCGACCCCGTGGGTCGAATTTCGCGGCGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2379655‑2379610 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCATGAGG  >  NC_002947/2379652‑2379759

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.