| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 380858 | 13 (0.590) | 7 (0.390) | 7/210 | NT | 32.1% | intergenic (+45/+64) | gbcB/PP_0317 | glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer |
| ? | NC_002947 | = 380892 | 19 (1.050) | intergenic (+79/+30) | gbcB/PP_0317 | glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer | |||||
TGGAAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCG‑CTATCTTCAGGACTGCG‑GTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCC > NC_002947/380710‑381007 | tGGAAATGGAGCACAACGGCGGGATTACCGTAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAa > 2:474170‑M1/1‑149 (MQ=255) cggcggGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCG‑CTATCTTc < 2:534817/150‑1 (MQ=255) cggcggGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCG‑CTATCGTc < 2:34846/150‑1 (MQ=255) gcggGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCG‑CTATCTTCAg < 1:224395/150‑1 (MQ=255) gATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAaggttcaccgcagtcctgaagat > 2:553982‑M1/1‑127 (MQ=255) ccGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCG‑CTATCTTCAGGACTGCG‑Gt < 2:467892/150‑1 (MQ=255) cGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCG‑CTATCTTCAg < 2:55873/140‑1 (MQ=255) cGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCG‑CTATCTTCAg > 1:55873/1‑140 (MQ=255) aaGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAaggttcaccgcagtcctgaagatagcgatga > 1:190341‑M1/1‑119 (MQ=255) cGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCG‑CTATCTTCAGGACTGCG‑GTGAACCTtgtg > 2:535447‑M2/1‑146 (MQ=255) cGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCG‑CTATCTTCAGGACTGCG‑GTGAACCTtgtg > 2:522944‑M2/1‑146 (MQ=255) gAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAaggttcaccgcagtcctgaagatagcgatgaccctgtgg < 1:553982‑M1/150‑40 (MQ=255) gCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCNCAaggttcaccgcagtcctgaagatagcgatgaccctgtgggag < 1:474170‑M1/150‑43 (MQ=255) ccGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAaggttcaccgcagtcctgaagatagcgatgaccctgtgggagc < 2:190341‑M1/150‑44 (MQ=255) aTCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCG‑CTATCTTCAGGACTGCG‑GTGAACCTtgtgggagcgggcgtgcccg < 1:474385‑M2/150‑21 (MQ=255) tgctgcAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCAGATCCTACAGTGT‑ATAGACCATGATCAGCA‑TGTGACTCAATCTTGTGGGAGCGGGCGTGCCCGCGACTGCtt < 1:294628/150‑1 (MQ=255) tgcAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCG‑CTATCTTCAGGACTGCG‑GTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTa < 2:474385/150‑1 (MQ=255) ccGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAaggttcaccgcagtcctgaagatagcgatgaccctgtg < 1:57529‑M1/113‑39 (MQ=255) ccGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAaggttcaccgcagtcctgaagatagcgatgaccctgtg > 2:57529‑M1/1‑75 (MQ=255) tCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCG‑CTATCTTCAGGACTGCG‑GTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGa < 2:130769/128‑1 (MQ=255) tCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCG‑CTATCTTCAGGACTGCG‑GTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGa > 1:130769/1‑128 (MQ=255) cgGGCACGCCCGCTCCCACAaggttcaccgcagtcctgaagatagcgatgaccctgtgggagcgggcgtgcccgcgaagaagccagactggccactggatcagtaatcgatccgcacatcccctttcggcacgctgcagcacgacaggat < 1:474385‑M1/150‑131 (MQ=255) aCGCCCGCTCCCACAGGGTCATCG‑CTATCTTCAGGACTGCG‑GTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAAcc > 1:254298/1‑92 (MQ=255) aCGCCCGCTCCCACAGGGTCATCG‑CTATCTTCAGGACTGCG‑GTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAAcc < 2:254298/92‑1 (MQ=255) gCTCCCACAGGGTCATCG‑CTATCTTCAGGACTGCG‑GTGAACCTtgtgggagcgggcgtgcccgcgaagaagccagactggccactggatcagtaatcgatccgcacatcccctttcggcacgctgcagcacgacaggatgtagccctcgg < 2:190341‑M2/150‑108 (MQ=255) cTCCCACAGGGTCATCG‑CTATCTTCAGGACTGCG‑GTGAACCTtgngggagcgggcgtgcccgcgaagaagccagactggccactggatcagtaatcgatccgcacatcccctttcggcacgctgcagcacgacaggatgtagccctcggc < 1:474170‑M2/150‑109 (MQ=255) tCCCACAGGGTCATCG‑CTATCTTCACCGTTGCG‑GTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGAt < 1:369951/150‑1 (MQ=255) ccACAGGGTCATCG‑CTATCTTCAGGACTGCG‑GTGAACCTtgtgggagcgggcgtgcccgcgaagaagccagactggccactggatcagtaatcgatccgcacatcccctttcggcacgctgcagcacgacaggatgtagccctcggcttc < 1:553982‑M2/150‑112 (MQ=255) cacaaggttcaccgcagtcctgaagatagcgatgaccctgtgggagcgggcgtgcccgcgaagaagccagactggccactggatcagtaatcgatccgcacatcccctttcggcacgctgcagcacgacaggatgtagccctcggcttcg > 2:522944‑M1/1‑4 (MQ=255) cacaaggttcaccgcagtcctgaagatagcgatgaccctgtgggagcgggcgtgcccgcgaagaagccagactggccactggatcagtaatcgatccgcacatcccctttcggcacgctgcagcacgacaggatgtagccctcggcttcg > 2:535447‑M1/1‑4 (MQ=255) cacaGGGTCATCG‑CTATCTTCAGGACTGCG‑GTGAACCTtgtgggagcgggcgtgcccgcgaagaagccagactggccactggatcagtaatcgatccgcacatcccctttcgg < 1:57529‑M2/113‑76 (MQ=255) cacaGGGTCATCG‑CTATCTTCAGGACTGCG‑GTGAACCTtgtgggagcgggcgtgcccgcgaagaagccagactggccactggatcagtaatcgatccgcacatcccctttcgg > 2:57529‑M2/1‑38 (MQ=255) acaGGGTCATCG‑CTATCTTCAGGACTGCG‑GTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTACGGAACCGGGCTACCAGTCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATgcgc > 2:206742/1‑150 (MQ=255) aGGGTCATCG‑CTATCTTCAGGACTGCG‑GTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCATGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGccg > 1:225156/1‑149 (MQ=255) aGGGTCATCG‑CTATCTTCAGGACTGCG‑GTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGa > 2:219744/1‑143 (MQ=255) aGGGTCATCG‑CTATCTTCAGGACTGCG‑GTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGa < 1:219744/143‑1 (MQ=255) | TGGAAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCG‑CTATCTTCAGGACTGCG‑GTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCC > NC_002947/380710‑381007 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |