New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2048837 = | 9 (0.410) | 3 (0.160) | 3/222 | NT | 26.3% | intergenic (+33/+106) | PP_1821/PP_1822 | glutathione S‑transferase family protein/hypothetical protein |
? | NC_002947 | 2048928 = | 9 (0.470) | intergenic (+124/+15) | PP_1821/PP_1822 | glutathione S‑transferase family protein/hypothetical protein |
TATGCCTACACCCATGTGGCGCAGCAGGGCGGGTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCT > NC_002947/2048688‑2048962 | gccaggccctgcaggaaggtggcggccgggtgaaagtgccatgcctgcgcattgaagaagccggcaaggtgacctggatgtatgagtccaaggcaatcatcgcttacctggatgagcggtttgccgccatctgactgacgctgcagatcc < 2:142949‑M1/1‑1 (MQ=255) cTACACCCATGTGGCGCAGCAGGGCGGGTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTtgt < 1:358169/150‑1 (MQ=255) acCCATGTGGCGCAGCAGGGCGGGTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCTGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGa > 1:535718/1‑150 (MQ=255) aggtggcggccgggtgaaagtgccatgcctgagcattgaagaagccggcaaggtgacctggatgtatgagtccaaggcaatcatcgcttacctggatgagcggtttgccgccatctgactgacgctgcagatcCCTTGTGGGAGCGGGCg < 1:336121‑M1/17‑1 (MQ=255) gcagGGCGGGTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCcgc > 1:244637/1‑150 (MQ=255) ttCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGgc > 1:160272/1‑150 (MQ=255) tGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGGAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACggg > 2:409336/1‑142 (MQ=255) tGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACggg < 1:409336/142‑1 (MQ=255) tACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAac < 2:244637/150‑1 (MQ=255) aagccggcaaggtgacctggatgtatgagtccaaggcaatcatcgcttacctggatgagcggtttgccgccatctgactgacgctgcagatcCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGt < 2:407792‑M1/58‑1 (MQ=255) ctggatgtatgagtccaaggcaatcatcgcttacctggatgagcggtttgccgccatctgactgacgctgcagatcCCTtgtg > 1:231097‑M1/77‑83 (MQ=255) ctggatgtatgagtccaaggcaatcatcgcttacctggatgagcggtttgccgccatctgactgacgctgcagatcCCTtgtg < 2:231097‑M1/7‑1 (MQ=255) gggTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGc < 1:112031/150‑1 (MQ=255) tatgagtccaaggcaatcatcgcttacctggatgagcggtttgccgccatctgactgacgctgcagatcCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGc > 2:253928‑M1/70‑150 (MQ=255) aaggcaatcatcgcttacctggatgagcggtttgccgccatctgactgacgctgcagatcCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAg > 1:407792‑M1/61‑150 (MQ=255) cTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCt > 2:367773/1‑150 (MQ=255) | TATGCCTACACCCATGTGGCGCAGCAGGGCGGGTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCT > NC_002947/2048688‑2048962 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |