| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4890813 | 26 (1.180) | 3 (0.150) | 3/238 | NT | 12.0% | intergenic (+168/‑71) | glxR/ttuD | 2‑hydroxy‑3‑oxopropionate reductase/hydroxypyruvate reductase |
| ? | NC_002947 | = 4890835 | 20 (0.980) | intergenic (+190/‑49) | glxR/ttuD | 2‑hydroxy‑3‑oxopropionate reductase/hydroxypyruvate reductase | |||||
TTCGCGGGTAAACCCGCTCCTACCAAAGACCGCACAATCGCTCAGAGCTGTGCATGTAGGAGCGGGCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGCCATGTCGGTCGATCCGCAAAAACTTCTCCGCGAACTGTTCGACACAGCCATCGCCGCCGCCCACCCCCGTCAAGTCCTC > NC_002947/4890670‑4890961 | ttCGCGGGTAAACCCGCTCCTACCAAAGACCGCACAATCGCTCAGAGCTGTGCATGTAGGAGCGGGCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGc > 2:43108/1‑150 (MQ=255)ttCGCGGGTAAACCCGCTCCTACCAAAGACCGCACAATCGCTCAGAGCTGTGCATGTAGGAGCGGGCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGAATCGAGCAACACCCGCCCCTGGTTCGGc < 2:118901/150‑1 (MQ=255) ccGCTCCTACCAAAGACCGCACAATCGCTCAGAGCTGTGCATGTAGGAGCGGGCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCa > 2:464379/1‑150 (MQ=255) ccGCTCCTACCAAAGACCGCACAATCGCTCAGAGCTGTGCATGTAGGAGCGGGCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATAAGGTCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCa > 1:484855/1‑150 (MQ=255) ccTACCAAAGACCGCACAATCGCTCAGAGCTGTGCATGTAGGAGCGGGCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTcc > 1:233825‑M2/1‑148 (MQ=255) cAAAGACCGCACAATCGCTCAGAGCTGTGCATGTAGGAGCGGGCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTccagggg < 1:462345‑M2/150‑8 (MQ=255) aGACCGCACAATCGCTCAGAGCTGTGCATGTAGGAGCGGGCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGt > 1:306889/1‑150 (MQ=255) aGACCGCACAATCGCTCAGAGCTGTGCATGTAGGAGCGGGCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGt > 2:339228/1‑150 (MQ=255) gACCGCACAATCGCTCAGAGCTGTGCATGTAGGACACCCCGTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGaactgcctccgtgcaggccgaaccaggggcggg < 1:29126‑M1/150‑34 (MQ=255) aCCGCACAATCGCTCAGAGCTGTGCATGTAGGAGCGGGCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGttt < 2:306889/150‑1 (MQ=255) cGCACAATCGCTCAGAGCTGTGCATGTAGGAGCGGGCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGttttt > 1:89597/1‑150 (MQ=255) cGCACAATCGCTCAGAGCTGTGCAGGTAGGAGCGGGCTTGCCCGCTAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGttttt > 2:304739/1‑150 (MQ=255) cacaATCGCTCAGAGCTGTGCATGTAGGATCCGGCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGATACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGa < 1:433850/150‑1 (MQ=255) aaTCGCTCAGAGCTGTGCATGTAGGAGCGGGCTTGCCCGCGAAGAAGCCAACGCCGTTGAACTTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTc < 1:497510/150‑1 (MQ=255) tCGCTCAGAGCTGTGCATGTAGGAGCGGGCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTg < 2:462345/150‑1 (MQ=255) cAGAGCTGTGCATGTAGGAGCGGGCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGaa < 1:339228/150‑1 (MQ=255) tAGGAGCGGGCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTccag < 1:318590‑M2/114‑5 (MQ=255) tAGGAGCGGGCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTccag > 2:318590‑M2/1‑110 (MQ=255) gAGCGGGCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTccaggg > 2:145982‑M2/1‑107 (MQ=255) gAGCGGGCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTccaggg < 1:145982‑M2/113‑7 (MQ=255) gAGCGGGCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGc > 2:495783/1‑150 (MQ=255) gggCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGc > 2:208633/1‑150 (MQ=255) gggCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGc < 1:464379/150‑1 (MQ=255) ccGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACCGGCCCCATGGTGGCATCGAGCAACACCCGCCCCTGTTTCGGCATGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGCCATgtcgg > 1:294557/1‑150 (MQ=255) cgcgAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGCACAACAATAATTGGGAGCCTGCCATgtcggt < 2:348823/150‑1 (MQ=255) gTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGaactgcctccgtgcaggccgaaccaggggcgggtgttgctcgat < 1:397137‑M1/98‑45 (MQ=255) gTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGaactgcctccgtgcaggccgaaccaggggcgggtgttgctcgat > 2:397137‑M1/1‑54 (MQ=255) aaCCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGCCATGTCGGTCGATCCGCAAAAACTTCTCcgc < 1:43108/150‑1 (MQ=255) gCGACCACAGTCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGCCATGTCGGTCGATCCGCAAAAACTTCTCCGCGAACt < 1:503567/150‑1 (MQ=255) cccAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGCCATGTCGGTCGATCCGCAAAAACTTCTCCGCGAACTGTTCGACACAg < 1:304739/150‑1 (MQ=255) aTCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTccaggggcgggtgttgctcgatgccaccattgggcctgtggtcgcaggttcaac < 1:397137‑M2/98‑55 (MQ=255) aTCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTccaggggcgggtgttgctcgatgccaccattgggcctgtggtcgcaggttcaac > 2:397137‑M2/1‑44 (MQ=255) aaCACCCGCCCTTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGGACAACAATAATTGGCAGCCTGCCGTGTCGGTCCATCCGCACAAACTTCTCCGCGAACTGTTCGACACAGGCATCGCCGCCGCCCAccc < 2:89186/150‑1 (MQ=255) acCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAAtt < 1:70832/71‑1 (MQ=255) acCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAAtt > 2:70832/1‑71 (MQ=255) acCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGCCATGTCGGTCGATCCGCAAAAACTTCTCCGCGAACTGTTCGACACAGCCATCGCCGCCGCCCACCCCCg > 1:345556/1‑150 (MQ=255) cccGCCCCTGGTTCGGCCTGCACGGAGGCAGTTccaggggcgggtgttgctcgatgccaccattgggcctgtggtcgcaggttcaacggcgttggcttcttcgcgggcacggggtgtcctacatgcacagctctgagcgattgtgcggtc < 1:29126‑M2/150‑118 (MQ=255) ccccTGGaactgcctccgtgcaggccgaaccaggggcgggtgttgctcgatgccaccattgggcctgtggtcgcaggttcaacggcgttggcttcttcgcgggcaagcccgctcctacatgcacagctctgagcgattgtgcggtctttg < 1:462345‑M1/150‑144 (MQ=255) cccTGGaactgcctccgtgcaggccgaaccaggggcgggtgttgctcgatgccaccattgggcctgtggtcgcaggttcaacggcgttggcttcttcgcgggcaagcccgctc > 2:145982‑M1/1‑6 (MQ=255) cccTGGaactgcctccgtgcaggccgaaccaggggcgggtgttgctcgatgccaccattgggcctgtggtcgcaggttcaacggcgttggcttcttcgcgggcaagcccgctc < 1:145982‑M1/113‑108 (MQ=255) cccTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGCCATGTCGGTCGATCCGCAAAAACTTCTCCGCGAACTGTTCGACACAGCCATCGCCGCCGCCCACCCCCGTCAAGt < 2:89597/150‑1 (MQ=255) cTGGaactgcctccgtgcaggccgaaccaggggcgggtgttgctcgatgccaccattgggcctgtggtcgcaggttcaacggcgttggcttcttcgcgggcaagcccgctccta > 2:318590‑M1/1‑4 (MQ=255) cTGGaactgcctccgtgcaggccgaaccaggggcgggtgttgctcgatgccaccattgggcctgtggtcgcaggttcaacggcgttggcttcttcgcgggcaagcccgctccta < 1:318590‑M1/114‑111 (MQ=255) ggaactgcctccgtgcaggccgaaccaggggcgggtgttgctcgatgccaccattgggcctgtggtcgcaggttcaacggcgttggcttcttcgcgggcaagcccgctcctacatgcacagctctgagcgattgtgcggtctttggtagg > 1:233825‑M1/1‑2 (MQ=255) | TTCGCGGGTAAACCCGCTCCTACCAAAGACCGCACAATCGCTCAGAGCTGTGCATGTAGGAGCGGGCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGCCATGTCGGTCGATCCGCAAAAACTTCTCCGCGAACTGTTCGACACAGCCATCGCCGCCGCCCACCCCCGTCAAGTCCTC > NC_002947/4890670‑4890961 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |