New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5280943 = | 26 (1.180) | 4 (0.230) | 4/206 | NT | 17.8% | intergenic (+28/+110) | trmA/pcaG | tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA/protocatechuate 3,4‑dioxygenase subunit alpha |
? | NC_002947 | 5281029 = | 16 (0.900) | intergenic (+114/+24) | trmA/pcaG | tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA/protocatechuate 3,4‑dioxygenase subunit alpha |
CAGCGAACATTGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAAT > NC_002947/5280803‑5281091 | cAGCGAACATTGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGCTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTcgc < 2:365957/150‑1 (MQ=255) aGCGAACATTGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTcgcg < 1:421232/150‑1 (MQ=255) aGCGAACATTGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATAGGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTcgcg < 2:198715/150‑1 (MQ=255) ccgcagcggcgtgaaaccttgattgccaagcgttgcgaagtggatgggaagacggcgtaccgctttgatatccgcattcaggggtaaggtgagaccgtcttcttcgacttctgaggtgaagcttggccccgctctcctCCCCATTCGCgg > 2:505106‑M1/139‑150 (MQ=255) ccgcagcggcgtgaaaccttgattgccaagcgttgcgaagtggatgggaagacggcgtaccgctttgatatccgcattcagggggaaggggagaccgtcttcttcgacttctgaggtgaagcttggggccgctctgcgGCCCATTCGCgg > 2:399117‑M1/139‑150 (MQ=255) gcagcggcgtgaaaccttgattgccaagcgttgcgaagtggatgggaagacggcgtaccgctttgatatccgcattcagggggaaggggagaccgtcttcttcgacttctgaggtgaagcttggggccgctctgcgGCCCATTCGCGGGc < 1:305670‑M1/14‑1 (MQ=255) tgaaaccttgattgccaagcgttgcgaagtggatgggaagacggcgtaccgctttgatatcagcattcagggggaaggggagaccgtcttcttcgacttctgaggtgaagcttggggccgctctgcgGCCCAt < 1:171491‑M1/6‑1 (MQ=255) tgaaaccttgattgccaagcgttgcgaagtggatgggaagacggcgtaccgctttgatatcagcattcagggggaaggggagaccgtcttcttcgacttctgaggtgaagcttggggccgctctgcgGCCCAt > 2:171491‑M1/128‑133 (MQ=255) aGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACAtt > 2:385517/1‑150 (MQ=255) cacccaccGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATc < 2:540897/150‑1 (MQ=255) cacccaccGCACCGATGGCTGTGAAGTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGGTCGTTGTATTGCCGGGGCGGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATc < 2:270290/150‑1 (MQ=255) ccaccGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATAAGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGc > 1:7228/1‑150 (MQ=255) caagcgttgcgaagtggatgggaagacggcgtaccgctttgatatccgcattcagggggaaggggagaccgtcttcttcgacttctgaggtgaagcttggggccgctctgcgGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGc < 1:361905‑M1/38‑1 (MQ=255) aGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACg > 1:472416/1‑150 (MQ=255) ggaagacggcgtaccgctttgatatccgcattcagggggaaggggagaccgtcttcttcgacttctgaggtgaagcttggggccgctctgcgGCCCATTCGCGGGCaa < 1:62990‑M1/16‑1 (MQ=255) ggaagacggcgtaccgctttgatatccgcattcagggggaaggggagaccgtcttcttcgacttctgaggtgaagcttggggccgctctgcgGCCCATTCGCGGGCaa > 2:62990‑M1/93‑108 (MQ=255) cATTGTTTGACCAGTTCCCGTGTACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCGGACATTGATCGGCGTCGGTGGACGAAGATCGtt < 2:291869/150‑1 (MQ=255) cATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGtt < 2:472416/150‑1 (MQ=255) aTTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGc < 1:256354/129‑1 (MQ=255) aTTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGc > 2:256354/1‑129 (MQ=255) aCCAGTTACCGTATACCCAACATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCg > 1:88879/1‑150 (MQ=255) gtaccgctttgatatccgcattcagggggaaggggagaccgtcttcttcgacttctgaggtgaagcttggggccgctctgcgGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCgg > 2:361905‑M1/83‑150 (MQ=255) tataCCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGtt < 2:236511/130‑1 (MQ=255) tataCCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGtt > 1:236511/1‑130 (MQ=255) atatccgcattcagggggaaggggagaccgtcttcttcgacttctgaggtgaagcttggggccgctctgcgGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGa > 1:224354‑M1/72‑135 (MQ=255) atatccgcattcagggggaaggggagaccgtcttcttcgacttctgaggtgaagcttggggccgctctgcgGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGa < 2:224354‑M1/64‑1 (MQ=255) gagaGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAg < 2:414298/119‑1 (MQ=255) gagaGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAg > 1:414298/1‑119 (MQ=255) gggagaccgtcttcttcgacttctgaggtgaagcttggggccgctctgcgGCCCATTCGCGGGCAAGCCCGCTc > 1:44972‑M1/51‑74 (MQ=255) gggagaccgtcttcttcgacttctgaggtgaagcttggggccgctctgcgGCCCATTCGCGGGCAAGCCCGCTc < 2:44972‑M1/24‑1 (MQ=255) gggTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGcccc > 2:89105/1‑150 (MQ=255) ctgctgGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCt < 1:89105/150‑1 (MQ=255) gcTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGt < 2:88879/150‑1 (MQ=255) ttGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCaga > 2:295853/1‑116 (MQ=255) ttGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCaga < 1:295853/116‑1 (MQ=255) ttGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGaagaag > 2:259667/1‑150 (MQ=255) tATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACg < 1:386139/150‑1 (MQ=255) ccGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGtctc < 2:7228/150‑1 (MQ=255) ggCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCTAGGCATAAGTCGAAGAAGACGGTCTCCCCt < 1:385517/150‑1 (MQ=39) aGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAAt > 2:294398/1‑150 (MQ=255) | CAGCGAACATTGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAAT > NC_002947/5280803‑5281091 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |