New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5336765 =	27 (1.230)	4 (0.190)	4/248	NT	12.9%	coding (167/1443 nt)	PP_4696	nitrogen regulation protein NR(I)
	?	NC_002947	5336813 =	28 (1.310)					coding (215/1443 nt)	PP_4696	nitrogen regulation protein NR(I)

CGTCGAAGACGAAACCATCATCCGCTCGGCCCTGCGTCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGAC  >  NC_002947/5336616‑5336901                                                                                                                                                      |                                                                                                                                          agcgggggcgttctgccggtcacgcagaatacgcgctactgcctgcagcatctcgtcgtggtcgaagggcttggcgatgtagtccaccgcgcccattttcatcgagtccaccgctgagcgcaggctggcgtaactggtcatgatcagcac                                                                                                                                           >  2:43306‑M1/150‑150 (MQ=255)     gAAGACGAAACCATCATCCGCTCGGCCCTGCGTCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGgc                                                                                                                                       >  1:257784/1‑150 (MQ=255)                catcatCCGCTCGGCCCTGCGTCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCAc                                                                                                                            >  2:348187/1‑150 (MQ=255)                  tcatcCGCTCGGCCCTGCGTCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCg                                                                                                                          >  1:349525/1‑150 (MQ=255)                           cGGCCCTGCGTCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑ttgatc                                                                                                                <  2:102106/150‑6 (MQ=255)                                       gCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCTTGATC‑AGCTCggtgcc                                                                                                     >  2:42629/1‑145 (MQ=255)                                       gCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCTTGATC‑AGCTCggtgcc                                                                                                     <  1:42629/149‑5 (MQ=255)                                       gCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAgg                                                                                                    <  1:307779/150‑1 (MQ=255)                                          cctgcagcatctcgtcgtggtcgaagggcttggcgatgtagtccaccgcgcccattttcatcgagtccaccgctgagcgcaggctggcgtaactggtcatgatcagcaCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCa                                                                                                 <  2:271964‑M1/42‑1 (MQ=255)                                                gcatctcgtcgtggtcgaagggcttggcgatgtagtccaccgcgcccattttcatcgagtccaccgctgagcgcaggctggcgtaactggtcatgatcagcaCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCgg                                                                                           >  1:271964‑M1/103‑150 (MQ=255)                                                             ccAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGAc                                                                              <  2:349525/150‑1 (MQ=255)                                                                            cGGCTCGGTGCAGGAAGCCCAGGTACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCGGGCGCGCCGGGCa                                                                                                                             <  2:300932/89‑1 (MQ=255)                                                                            cGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCGGGCGCGCCGGGCa                                                                                                                             >  1:300932/1‑89 (MQ=255)                                                                                       aGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCgg                                                    >  2:112522/1‑150 (MQ=255)                                                                                       aGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCgg                                                    >  1:211912/1‑150 (MQ=255)                                                                                         gAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTg                                                  >  2:536120/1‑150 (MQ=255)                                                                                         gAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTg                                                  >  2:536177/1‑150 (MQ=255)                                                                                              ccAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTc                                             >  1:359949/1‑150 (MQ=255)                                                                                                        ttCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATg                                   >  2:327956/1‑150 (MQ=255)                                                                                                                 gCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTg                          <  1:112522/150‑1 (MQ=255)                                                                                                                   cACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGa                        <  1:348187/150‑1 (MQ=255)                                                                                                                   cACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGa                        <  2:359949/150‑1 (MQ=255)                                                                                                                          gACCTCCTCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTGGGCCAGGGCACCCCGGTGCTCACCATGACCAGTTCCCCCAGCCCTCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATc                 <  1:128958/150‑1 (MQ=255)                                                                                                                           aCCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCg                >  1:289236/1‑150 (MQ=255)                                                                                                                             cTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGt                                                   >  1:552519/1‑113 (MQ=255)                                                                                                                             cTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGt                                                   <  2:552519/113‑1 (MQ=255)                                                                                                                                gcgtaactggtcatgatcagcaCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGtt                                                                         >  2:203926‑M1/23‑88 (MQ=255)                                                                                                                                gcgtaactggtcatgatcagcaCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGtt                                                                         <  1:203926‑M1/66‑1 (MQ=255)                                                                                                                                    tCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCt                                                          >  1:496479/1‑99 (MQ=255)                                                                                                                                    tCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCt                                                          <  2:496479/99‑1 (MQ=255)                                                                                                                                      aggtaCCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTc     >  2:292209/5‑150 (MQ=255)                                                                                                                                      agagACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTc     <  2:16046/147‑1 (MQ=255)                                                                                                                                         gACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGAc  <  1:327956/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                          CGTCGAAGACGAAACCATCATCCGCTCGGCCCTGCGTCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGAC  >  NC_002947/5336616‑5336901

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.