New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4852498	15 (0.680)	5 (0.340)	4/174	NT	35.5%	intergenic (‑124/+173)	recR/ybaB	recombination protein RecR/nucleoid‑associated broad specificity regulator
	?	NC_002947	= 4852557	8 (0.540)					intergenic (‑183/+114)	recR/ybaB	recombination protein RecR/nucleoid‑associated broad specificity regulator

ATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGAAGCCCGGCGGC  >  NC_002947/4852409‑4852698                                                                                                                                                     |                                                                                                                                               ataCCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTTCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCc                                                                                                                                               >  1:496797‑M2/1‑149 (MQ=255)  taCCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCcc                                                                                                                                              >  2:99473‑M2/1‑148 (MQ=255)      cAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCcccttt                                                                                                                                          >  2:458964‑M2/1‑144 (MQ=255)           ggggCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcga                                                                                                                                     >  1:265452‑M2/1‑139 (MQ=255)           ggggCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcga                                                                                                                                     >  2:454091‑M2/1‑139 (MQ=255)                                                                       ggCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGtt                                                                                            <  1:350000/131‑1 (MQ=255)                                                                       ggCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGtt                                                                                            >  2:350000/1‑131 (MQ=255)                                                                                   cgAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgcccccgc                                                             <  1:310018‑M2/150‑84 (MQ=255)                                                                                   cgAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgcccccgc                                                             <  1:437907‑M2/150‑84 (MQ=255)                                                                                    gAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccac                                                                      >  1:257910‑M2/1‑66 (MQ=255)                                                                                    gAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccac                                                                      <  2:257910‑M2/140‑75 (MQ=255)                                                                                                            cACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCAGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAgcggc                                                    >  1:465340/1‑133 (MQ=255)                                                                                                            cACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCAGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAgcggc                                                    <  2:465340/133‑1 (MQ=255)                                                                                                                          aaGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgcccccgctgggtataaaccgcctcttattgaattgtcaggcctttc                      >  2:310018‑M2/1‑28 (MQ=255)                                                                                                                            gCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGccc                              <  2:221902/140‑1 (MQ=255)                                                                                                                            gCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGccc                              >  1:221902/1‑140 (MQ=255)                                                                                                                                     ccGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCACTTAGAACGGCATCTTAAAgg          >  2:401648/1‑149 (MQ=255)                                                                                                                                             gCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGAAGCCCggcggc  >  1:321605/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                               ATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGAAGCCCGGCGGC  >  NC_002947/4852409‑4852698

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.