| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5827863 = | 33 (1.500) | 3 (0.140) | 3/244 | NT | 8.9% | intergenic (+9/+190) | mtgA/rpoH | monofunctional biosynthetic peptidoglycan transglycosylase/RNA polymerase factor sigma‑32 |
| ? | NC_002947 | 5827987 = | 30 (1.430) | intergenic (+133/+66) | mtgA/rpoH | monofunctional biosynthetic peptidoglycan transglycosylase/RNA polymerase factor sigma‑32 | |||||
CAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGGCAACCGCATCCCCGGCCTCCTCGCGGGCAAACCCGCGCCTACAGGCAACCGCATCCCCTGTAGG‑AGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGAATACGCTCAGCCGATACGCTG > NC_002947/5827842‑5828128 | cAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGGAAACCCGCTCCTACGGGCAACCGCATCCCCGGCCTTCTCGCGGGCAAACCCGCGCCTACAGGCAACCGCATCCCCTGCAGG‑AGCGGGCTTACCCGCGAAGAGGCCGGCAAAg < 1:473649/150‑1 (MQ=255) aGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGGCAACCGCATCCCCGGCCTCCTCGCGGGCAAACCCGCGCCTACAGGCAACCGCATCCCCTGTAGG‑AGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCcaaa > 1:481995/1‑150 (MQ=255) aaTGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGGCAACCGCATCCCCGGCCTCCTCGCGGGCAAACCCGCGCCTACAGGCAACCGCATCCCCTGTAGG‑AGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACaaaaaa < 2:413734/150‑1 (MQ=255) cccggcccTTTCGCGGGTAAACCCGCTCCTACGGGCAACCGCATCCCCGGCCTCCTCGCGGGCAAACCCGCGCCTACAGGCAACCGCATCCCCTGTAGG‑AGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCa > 1:32656/1‑150 (MQ=255) CCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGGCAACCGCATCCCCGGCCTCCTCGCGGGCAAACCCGCGCCTACAGGCAACCGAATCCCTGGTAGG‑AGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCAc < 2:17155‑M1/150‑1 (MQ=255) gcgGGTAAACCCGCTCCTACGGGCAACCGCATCCCCGGCCTCCTCGCGGGCAAACCCGCGCCTACAGGCAACCGCATCCCCTGTAGG‑AGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGcc > 1:178864/1‑150 (MQ=255) gtaagcccgctcctacaggggatgcggttgcctgtaggcgcgggtttgcccgcgaggaggccggggatgcggttgcccgtaggagcgggtttacccgcgaaagggccggCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCg > 2:183152‑M2/110‑150 (MQ=255) aaaCCCGCTCCTACGGGCAACCGCATCCCCGGCCTCCTCGCGGGCAAACCCGCGCCTACAGGCAACCGCATCCCCTGTAGG‑AGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGc < 1:254906/150‑1 (MQ=255) cTCCTACGGGCAACCGCATCCCCGGCCTCCTCGCGGGCAAACCCGCGCCTACAGGCAACCGCATCCCCTGTAGG‑AGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCtt < 2:386466/150‑1 (MQ=255) ccTACGGGCAACCGCATCCCCGGCCTCCTCGCGGGCAAACCCGCGCCTACAGGCAACCGCATCCCCTGTAGG‑AGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTa < 1:534039/150‑1 (MQ=255) gggCAACCGCATCCCCGGCCTCCTCGCGGGCAAACCCGCGCCTACAGGCAACCGCCTCCCCAGTAGGCAACGCCCGT‑CCCGTGAAGAGGCCTGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAAcc < 1:351155/150‑1 (MQ=255) aaCCGCATCCCCGGCCTCCTCGCGGGCAAACCCGCGCCTACAGGCAACCGCATCCCCTGTAGG‑AGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGa > 1:130357/1‑150 (MQ=255) aCCGCATCCCCGGCCTCCTCGCGGGCAAACCCGCGCCTACAGGCAACCGCATCCCCTGTAGG‑AGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGAc < 1:382185/150‑1 (MQ=255) ccccGGCCTCCTCGCGGGCAAACCCGCGCCTACAGGCAACCGCATCCCCTGTAGG‑AGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCa < 2:12085/150‑1 (MQ=255) cccGGCCTCCTCGCGGGCAAACCCGCGCCTACAGGCAACCGCATCCCCTGTAGG‑AGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAg < 2:338298/150‑1 (MQ=255) ccGGCCTCCTCGCGGGCAAACCCGCGCCTACAGGCAACCGCATCCCCTGTAGG‑AGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCt < 1:236042/123‑1 (MQ=255) ccGGCCTCCTCGCGGGCAAACCCGCGCCTACAGGCAACCGCATCCCCTGTAGG‑AGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCt > 2:236042/1‑123 (MQ=255) ccGGACTCCTCGCGGGCAAACCCGCGCCTACAGGCAACCGCATCCCCTGTAGG‑AGCGGGCTTACCCGCGAAGAGGCCGCCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAgg < 2:264339/150‑1 (MQ=255) cctcctCGCGGGCAAACCCGCGCCTACAGGCAACCGCATCCCCTGTAGG‑AGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGc < 2:557872/150‑1 (MQ=255) tcGCGGGCAAACCCGCGCCTACAGGCAACCGCATCCCCTGTAGG‑AGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCa < 2:437574/150‑1 (MQ=255) tcGCGGGCAAACCCGCGCCTACAGGCAACCGCATCCCCTGTAGG‑AGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCa < 2:32656/150‑1 (MQ=255) gcgGGCAAACCCGCGCCTACAGGCAACCGCATCCCCTGTAGG‑AGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGt < 2:481995/150‑1 (MQ=255) gcgaggaggccggggatgcggttgcccgtaggagcgggtttacccgcgaaagggccggCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACt > 1:553967‑M2/59‑121 (MQ=255) gcgaggaggccggggatgcggttgcccgtaggagcgggtttacccgcgaaagggccggCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACt < 2:553967‑M2/63‑1 (MQ=255) tACAGGCAACCGCATCCCCTGTAGG‑AGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCAt > 2:104141/1‑150 (MQ=255) tACAGGCAACCGCATCCCCTGTAGG‑AGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACACAATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCAt > 2:17679/1‑150 (MQ=255) ccGCATCCCCTGTAGG‑AGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCAttctt < 1:291206/150‑1 (MQ=255) cGCATCCCCTGTAGG‑AGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCAttcttc < 2:178864/150‑1 (MQ=255) aGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTGCATCGCATTCTTCTCCAACTGGCGAATa < 1:104141/150‑1 (MQ=255) gCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGc > 2:220260/1‑109 (MQ=255) gCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGc < 1:220260/109‑1 (MQ=255) ggCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGAATACGCt > 1:401874/1‑150 (MQ=255) ggCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGAATACGCt > 1:376899/1‑150 (MQ=255) ttACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCtt < 1:63889/106‑1 (MQ=255) ttACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCtt > 2:63889/1‑106 (MQ=255) gagGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCTAATACGCTCAGCCGATACGCTg < 1:17155/150‑1 (MQ=255) | CAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGGCAACCGCATCCCCGGCCTCCTCGCGGGCAAACCCGCGCCTACAGGCAACCGCATCCCCTGTAGG‑AGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGAATACGCTCAGCCGATACGCTG > NC_002947/5827842‑5828128 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |