| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,278,913 | T→C | 12.1% | D23D (GAT→GAC) | PP_3750 → | GntR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,278,913 | 0 | T | C | 12.1% | 80.9 / 3.3 | 33 | D23D (GAT→GAC) | PP_3750 | GntR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (13/16); new base C (2/2); total (15/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.11e-01 | |||||||||||
TCTTGGTAGCCTGTGACAAGCACCTGAGTCGCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTAC‑CAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGCGTATCGCGCAAGACCGTGGCCGAGGCCTATTCGCGGCTGACCTACGATAACCTGCTCAGCGGCGT > NC_002947/4278769‑4279050 | tctTGGTAGCCTGTGACAAGCACCTGAGGCGCAGCCAATCCGGTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAAGGCCGCAAAGGCCTGGCCGATCAGCTTTAC‑CAGCAATTGCGCGATGGTAt > 2:458110/1‑150 (MQ=255) ctTGGTAGCCTGTGACAAGCACCTGAGTCGCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTAC‑CAGCAATTGCGCGATGGTATc < 2:386740/150‑1 (MQ=255) cTGTGACAAGCACCTGAGTCGCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTAC‑CAGCAATTGCGCGATGGTATCGACAGCGGc > 1:200056/1‑150 (MQ=255) tgtgACAAGCACCTGAGTCGCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTAC‑CAGCAATTGCGCGATGGTATCGACAGCGGcc > 1:425890/1‑150 (MQ=255) aCAAGCACCTGAGTCGCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTAC‑CAGCAATTGCGCGATGGTATCGACAGCGGCCACCt > 1:93703/1‑150 (MQ=255) tGAGTCGCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTAC‑CAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCgg < 2:241224/150‑1 (MQ=255) gAGTCGCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTAC‑CAGCAATTGCGCGACGGTATCGACAGCGGCCACCTGGCCGCCGGc > 2:151527/1‑150 (MQ=255) cAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTAC‑CAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTgc > 1:186413/1‑150 (MQ=255) aTCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTAC‑CAGCAATTGCGCGATGGTATCGACAGCGGCCACCTgg > 1:355256/1‑130 (MQ=255) aTCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTAC‑CAGCAATTGCGCGATGGTATCGACAGCGGCCACCTgg < 2:355256/130‑1 (MQ=255) aTCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTCCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTAC‑CAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTgccg > 2:558667/1‑150 (MQ=255) tCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTAC‑CAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCg > 2:490050/1‑150 (MQ=255) tGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCTGCAAAGGCCTGGCCGATCAGCTTTAC‑CAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTct > 2:91938/1‑150 (MQ=255) gAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTAC‑CAGCAATTGCGCGACGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTctg < 1:151527/150‑1 (MQ=255) tccgctccgGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTAC‑CAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGaa > 2:63803/1‑150 (MQ=255) gACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTAC‑CAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGc < 1:63803/150‑1 (MQ=255) gCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTAC‑CAGCAATTGCGCGATGGTATCGACAGCGGCAACCTGGCCGCCGGCTCCCAACTGCCCCCTATCTGTCTTCTGGCTGAACAACTGTGCGTATc < 2:93646/150‑1 (MQ=255) ccATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTAC‑CAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGCGTATcgc < 1:560639/150‑1 (MQ=255) cATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTAC‑CAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGCGTATcgcg > 1:354749/1‑150 (MQ=255) tGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTAC‑CAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGCGTATCGCGCa > 2:54824/1‑150 (MQ=255) aaCTGCACATGCGCCTGGAGGGCCGCAAAGGCCTGGCCGCTACGCTATGCTGAATGAATGATCAGTTG‑AGCCACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGCGTATCGCGCAAGa < 1:490050/150‑1 (MQ=255) acaTTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTAC‑CAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGCGTATCGCGCAAGACCGTgg < 1:558667/150‑1 (MQ=255) tCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTAC‑CAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGCGTATCGCGCAAGACCGTGGCCGa < 2:200056/150‑1 (MQ=255) cGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTAC‑CAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGCGTATCGCGCAAGACCGTGGCCGAg < 2:425890/150‑1 (MQ=255) cGCAAAGGCCTGGCCGATCAGCTTTAC‑CAGCAATTGCGCGATGGTATACTGCGCTGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGCGTATCGCGCAAGACCGTGGCCGAGGCCTATTCGCgg < 1:458110/150‑1 (MQ=255) gATCAGCTTTAC‑CAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGCGTATCGCGCAAGACCGTgg < 2:129867/118‑1 (MQ=255) gATCAGCTTTAC‑CAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGCGTATCGCGCAAGACCGTgg > 1:129867/1‑118 (MQ=255) gATCAGCTTTAC‑CAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGCGTATAGCGCACGACCCTCGCCTAGGTCGATGTGCGGCTTGCCTTCGATatc < 2:93703/150‑3 (MQ=255) aTCAGCTTTAC‑CAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGCGTATCGCGCAAGACCGTGGCCGAGGCCTATTCGCGGCTGACCTACGATAAcc < 1:525501/150‑1 (MQ=255) cAGCTTTAC‑CAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGCGTATCGCGCAAGACCGTGGCCGAGGCCTATTCGCGGCTGACCTACGATAACCTg < 1:54824/150‑1 (MQ=255) aGCAATTGCGCGACGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGCGTATCGCGCAAGACCGTGGCCGAGGCCTATTCGCGGCTGACCTACGATAACCTGCt > 2:166735/1‑142 (MQ=255) aGCAATTGCGCGACGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGCGTATCGCGCAAGACCGTGGCCGAGGCCTATTCGCGGCTGACCTACGATAACCTGCt < 1:166735/142‑1 (MQ=255) gCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGCGTATCGCGCAAGACCGTGGCCGAGGCCTATTCGCGGCTGACCTACGATAACCTGCTCAGCGGCGt < 2:538488/150‑1 (MQ=255) | TCTTGGTAGCCTGTGACAAGCACCTGAGTCGCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTAC‑CAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGCGTATCGCGCAAGACCGTGGCCGAGGCCTATTCGCGGCTGACCTACGATAACCTGCTCAGCGGCGT > NC_002947/4278769‑4279050 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |