Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,325,532 | G→A | 15.3% | intergenic (‑140/‑35) | PP_3795 ← / → pvdA | hypothetical protein/L‑ornithine 5‑monooxygenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,325,532 | 0 | G | A | 15.3% | 57.9 / 3.1 | 27 | intergenic (‑140/‑35) | PP_3795/pvdA | hypothetical protein/L‑ornithine 5‑monooxygenase |
Reads supporting (aligned to +/- strand): ref base G (10/12); new base A (2/2); total (12/15) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01 |
GCTCATGTCGATTCCCTGCCTGAAAGATGGGTCCTTGCCGTAACCAACACATCGGCCGCCTCACGCTGTTCTTTAGCCCGCTTAAATTCCCCCTCGGCTGGCTCGTTCCAACTCATGTACTTGCGCAGGAGCCGGAGCCCCGGCGGGCGTCCATATTCGACCATTCAGGGAATCGCAGCCATGAGCCAGTCCTCACAGCAGGAAACCATCAAAGACATGATCGGCGTGGGCTTCGGCCCCTCCAACCTGGCCTTGGCCATCGCCCTGGAAGAGCTCGCC > NC_002947/4325387‑4325665 | gCTCATGTCGATTCCCTGCCTGAAAGATGGGTCCTTGCCGTAACCAACACATCGGCCGCCTCACGCTGTTCTTTAGCCCGCTTAAATTCCCCCTCGGCTGGCTCGTTCCAACTCATGTACTTGCGCAGGAGCCGGAGCCCCGGCGGGCGt > 2:512098/1‑150 (MQ=255) tCATGTCGATTCCCTGCCTGAAAGATGGGTCCTTGCCGTAACCAACACATCGGCCGCCTCACGCTGTTCTTTAGCCCGCTTAAATTCCCCCTCGGCTGGCTCGTTCCAACTCATGTACTTGCGCAGGAGCCGGAGCCCCGGCGGGCGTcc > 2:73875/1‑150 (MQ=255) ctgAAAGATGGGTCCTTGCCGTAACCAACACATCGGCCGCCTCACGCTGTTCTTTAGCCCGCTTAAATTCCCCCTCGGCTGGCTCGTTCCAACTCATGTACTTGCGCAGGAGCCGGAGCCCCGGCGGGCGTCCATATTCGACCATTCAgg > 1:22828/1‑150 (MQ=255) ctgAAAGATGGGTCCTTGCCGTAACCAACACATCGGCCGCCTCACGCTGTTCTTTAGCCCGCTTAAATTCCCCCTCGGCTGGCTCGTTCCAACTCATGTACTCGCGCAGGAGCCGGAGCCCCGGCGGGCGTCCATATTCGACCATTCAgg < 1:131691/150‑1 (MQ=255) aaGATGGGTCCTTGCCGTAACCAACACATCGGCCGCCTCACGCTGTTCTTTAGCCCGCTTAAATTCCCCCTCGGCTGGCTCGTTCCAACTCATGTACTTGCGCAGGAGCCGGAGCCCCGGCGGGCGTCCATATTCGACCATTCAGGGAAt < 1:73875/150‑1 (MQ=255) gTCCTTGCCGTAACCAACACATCGGCCGCCTCACGCTGTTCTTTAGCCCGCTTAAATTCCCCCTCGGCTGGCTCGTTCCAACTCATGTACTTGCGCAGGAGCCGGAGCCCCGGCGGGCGTCCATATTCGACCATTCAGGGAATCGCAGcc > 2:245582/1‑150 (MQ=255) cGTAACCAACACATCGGCCGCCTCACGCTGTTCTTTAGCCCGCTTAAATTCCCCCTCGGCTGGCTCGTTCCAACTCATGTACTTGCGCAGGAGCCGGAGCCCCGGCGGGCGTCCATATTCGACCATTCAGGGAATCGCAGCCATGAGCCa < 2:22828/150‑1 (MQ=255) ccAACACATCGGCCGCCTCACGCTGTTCTTTAGCCCGCTTAAATTCCCCCTCGGCTGGCTCGTTCCAACTCATGTACTTGCGCAGGAGCCGGAGCCCCGGCGGGCGTCCATATTCGACCATTCAGGGAATCGCAGCCATGAGCCAGTCCt > 2:501524/1‑150 (MQ=255) cAACACATCGGCCGCATCACGCTGTTCTTTAGCCCGCTTAAATTCCCCCTCGGCTGGCTCGTTCCAACTCATGTACTTGCGCAGGAGCCGGAGCCCCGGCGGGCGTCCATATTCGACCATTCAGGGAATCGCAGCCATGAGCCAGTCCTc > 1:101612/1‑150 (MQ=255) aTCGGCCGCCTCACGCTGTTCTTTAGCCCGCTTAAATTCCCCCTCGGCTGGCTCGTTCCAACTCATGTACTTGCGCAGGAGCCGGAGCCCCGGCGGGCGTCCATATTCGACCATTCAGGGAATCGCAGCCATGAGCCAGTCCTCAcagca > 1:28183/1‑150 (MQ=255) tCACGCTGTTCTTTAGCCCGCTTAAATTCCCCCTCGGCTGGCTCGTTCCAACTCATGTACTTGCGCAGGAGCCGGAGCCCCGGCGGGCGTCCATATTCGACCATTCAGGGAATCGCAGCCATGAGCCAGTCCTCACAGCAGGAAACCATc > 2:60202/1‑150 (MQ=255) tCTTTAGCCCGCTTAAATTCCCCCTCGGCTGGCTCGTTCCAACTCATGTACTTGCGCAGGAGCCGGAGCCCCGGCGGGCGTCCATATTCGACCATTCAGGGAATCGCAGCCATGAGCCAGTCCTCACAGCAGGAAACCATCAAAGACATg > 2:516873/1‑150 (MQ=255) cccGCTTAAATTCCCCCTCGGCTGGCTCGTTCCAACTCATGTACTTGCGCAGGAGCCGGAGCCCCGGCGGGCGTCCATATTCGa < 1:393393/84‑1 (MQ=255) cccGCTTAAATTCCCCCTCGGCTGGCTCGTTCCAACTCATGTACTTGCGCAGGAGCCGGAGCCCCGGCGGGCGTCCATATTCGa > 2:393393/1‑84 (MQ=255) tttAAATTCCCCCTCGGCTGGCTCGTTCCAACTCATGTACTTGCGCAGGAGCCGGAGCCCCGGCGGGCGTCCATATTCGACCATTCAGGGAATCGCAGCCATGAGCCAGTCCTCACAGCAGGAAACCATCAAAGACATGATCGGCGTggg < 2:520550/149‑1 (MQ=255) cTTAAATTCCCCCTCGGCTGGCTCGTTCCAACTCATGTACTTGCGCAGGAGCCGGAGCCCCGGCGAGCGTCCATATTCGACCATTCAGGGAATCGCAGCCATGAGCCAGTCCTCACAGCAGGAAACCATCAAGGACATGATCGGCGTgg > 1:69946/1‑149 (MQ=255) cTTAAATTCCCCCTCGGCTGGCTCGTTCCAACTCATGTACTTGCGCAGGAGCCGGAGCCCCGGCGAGCGTCCATATTCGACCATTCAGGGAATCGCAGCCATGAGCCAGTCCTCACAGCAGGAAACCATCAAAGACATGATCGGCGTgg > 1:115731/1‑149 (MQ=255) cTTAAATTCCCCCTCGGCTGGCTCGTTCCAACTCATGTACTTGCGCAGGAGCCGGAGCCCCGGCGAGCGTCCATATTCGACCATTCAGGGAATCGCAGCCATGAGCCAGTCCTCACAGCAGGAAACCATCAAAGACATGATCGGCGTgg < 2:69946/149‑1 (MQ=255) cTTAAATTCCCCCTCGGCTGGCTCGTTCCAACTCATGTACTTGCGCAGGAGCCGGAGCCCCGGCGAGCGTCCATATTCGACCATTCAGGGAATCGCAGCCATGAGCCAGTCCTCACAGCAGGAAACCATCAAAGACATGATCGGCGTgg < 2:115731/149‑1 (MQ=255) aaaTTCCCCCTCGGCTGGCTCGTTCCAACTCATGTACTTGCGCAGGAGCCGGAGCCCCGGCGCGCGTCCATATTCGACCATTCAGGGAAGCGCAGCCATGAGCCAGTCCTCACAGCAGGAAACCATCAAAGACATGATCGGCGTGGGCtt < 1:478440/150‑1 (MQ=255) aaTTCCCCCGAGCCTGCCTCGTTCCAACTCATGTACCTTCGCAGGAGCCGGAGCCCCGGCGGGCGTCCATATTCGACCATTCAGGGAATCGCAGCCATGAGCCAGTCCTCACAGCAGGAAACCATCAAAGACATGATCGGCGTGGGCTTc < 1:505023/150‑1 (MQ=255) tCCCCCTCGGCTGGCTCGTTCCAACTGATGTACTTGCGCCGGTGCCGGAGCCCCGGCGGGCGTCCATATTCGCCCATTCAGGGAATCGCAGCCATGAGCCAGTCCTCACAGCAGGAAACCATCAAAGACATGATCGGCGTGGGCTTCGGc < 2:397645/150‑1 (MQ=255) ggctCGTTCCAACTCATGTACTTGCGCAGGAGCCGGAGCCCCGGCGGGCGTCCATATTCGACCATTCAGGGAATCGCAGCCATGAGCCAGTCCTCACAGCAGGAAACCATCAAAGACATGATCGGCGTGGGCTTCGGCCCCTCCAACCTg < 1:271148/150‑1 (MQ=255) tCCAACTCATGTACTAGCGCAGAAGCCGGATCCCCGGCTGCCGTCCATATTCGACCATTCAGGGAATCGCAGCCATGAGGCAGTCCTCACAGCTGGAACCCATCAAAGACATGATCGGCGTGGGCTTCGGCCCCTCCTGCCTGGCCTTgg < 2:39191/150‑1 (MQ=255) gTACTTGCGCAGGAGCCGGAGCCCCGGCGGGCGTCCATATTCGACCATTCAGGGAATCGCAGCCATGAGCCAGTCCTCACAGCAGGAAACCATCAAAGACATGATCGGCGTGGGCTTCGGCCCCTCCAACCTGGCCTTGGCCATCGCCCt < 1:245582/150‑1 (MQ=255) ttGCGCAGGAGCCGGAGCCCCGGCGGGCGTCCATATTCGACCATTCAGGGAATCGCAGCCATGAGCCAGTCCTCACAGCAGGAAACCATCAAAGACATGATCGGCGTGGGCTTCGGCCCCTCCAACCTGGCCTTGGCCATCGCCCTGGaa < 1:501524/150‑1 (MQ=255) agccggagccCCGGCGGGCGTCCATATTCGACCATTCAGGGAATCGCAGCCATGAGCCAGTCCTCACAGCAGGAAACCATCAAAGACATGATCGGCGTGGGCTTCGGCCCCTCCAACCTGGCCTTGGCCATCGCCCTGGAAGAGCTCGcc < 1:512098/150‑1 (MQ=255) | GCTCATGTCGATTCCCTGCCTGAAAGATGGGTCCTTGCCGTAACCAACACATCGGCCGCCTCACGCTGTTCTTTAGCCCGCTTAAATTCCCCCTCGGCTGGCTCGTTCCAACTCATGTACTTGCGCAGGAGCCGGAGCCCCGGCGGGCGTCCATATTCGACCATTCAGGGAATCGCAGCCATGAGCCAGTCCTCACAGCAGGAAACCATCAAAGACATGATCGGCGTGGGCTTCGGCCCCTCCAACCTGGCCTTGGCCATCGCCCTGGAAGAGCTCGCC > NC_002947/4325387‑4325665 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |