Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,570,584 | T→A | 15.4% | L135Q (CTG→CAG) | treY → | maltooligosyl trehalose synthase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,570,584 | 0 | T | A | 15.4% | 65.3 / 4.9 | 26 | L135Q (CTG→CAG) | treY | maltooligosyl trehalose synthase |
Reads supporting (aligned to +/- strand): ref base T (13/9); new base A (2/2); total (15/11) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01 |
CCTCGACACGGTGTCCAACCACATGGCCGTAGGCGGTGCCGACAACCCCTGGTGGCAAAGCCTGCTGGCCTGGGGACGGCGCAGTCCGTATGCAGAGTTCTTCGACATCCAGTGGCACTCCAGCGACCCACTGCTGGCCGGGCAACTGCTGTTGCCGTTCCTCGGCAGCGACTACGGCGTGGCGCTCAGGAATGGCGAGATACCACTGCAGTTCGACAAACAGCAGGGGCTGCTGCAAGTGGCCCATTACGCGCATCGTTTCCCGATCTGCCCGGTCGATTACGGCTGGATTC > NC_002947/4570435‑4570727 | ccTCGACACGGTGTCCAACCACATGGCCGTAGGCGGTGCCGACAACCCCTGGTGGCAAAGCCTGCTGGCCTGGGGACGGCGCAGTCCGTATGCAGAGTTCTTCTACATCCAGTGGCACTCCAGCGACCCACTGCTGGCCGGGCAActgct < 1:493253/150‑1 (MQ=255) cGGTGTCCAACCACATGGCCGTAGGCGGTGCCGACAACCCCTGGTGGCAAAGCCTGCTGGCCTGGGGACGGCGCAGTCCGTATGCAGAGTTCTTCGACATCCAGTGGCACTCCAGCGACCCACTGCTGGCCGGGCAACAGCAGTTGcccg < 2:192381/150‑3 (MQ=255) gtgtCCAACCACATGGCCGTAGGCGGTGCCGACAACCCCTGGTGGCAAAGCCTGCTGGCCTGGGGACGGCGCAGTCCGTATGCAGAGTTCTTCGACATCCAGTGGCACTCCAGCGACCCACTGCTGGCCTGGCAACTGCTGTTGCCGTTc < 2:443812/150‑1 (MQ=255) tCCAACCACATGGCCGTAGGCGGTGCCGACAACCCCTGGTGGCAAAGCCTGCTGGCCTGGGGACGGCGCAGTCCGTATGCAGAGTTCTTCGACATCCAGTGGCACTCCAGCGACCCACTGCTGGCCGGGCAACTGCTGTTGCCGTTCCTc < 2:105761/150‑1 (MQ=255) cacaTGGCCGTAGGCGGTGCCGACAACCCCTGGTGGCAAAGCCTGCTGGCCTGGGGACGGCGCAGTCCGTATGCAGAGTTCTTCGACATCCAGTGGCACTCCAGCGACCCACTGCTGGCCGGGCAACTGCTGTTGCCGTTCCTCGGCAGc < 2:138810/150‑1 (MQ=255) tggCAAAGCCTGCTGGCCTGGGGACGGCGCAGTCCGTATGCAGAGTTCGTCGACATCCAGTGGCACTCCAGCGACCCACTGCTGGCCGGGCAACTGCTGTTNCCGNTCCGNGGCAGCGACTACGGCGTGGCGCTCAGGAATGGCGAGATa < 1:450440/150‑1 (MQ=255) aaaGCCTGCTGGCCTGGGGACGGCGCAGTCCGTATGCAGAGTTCTTCGACATCCAGTGGCACTCCAGCGACCCACTGCTGGCCGGGCAACTGCTGTTGCCGTTCCTCGGCAGCGACTACGGCGTGGCGCTCAGGAATGGCGAGATACCAc > 1:233553/1‑150 (MQ=255) gCCTGCTGGCCTGGGGACGGCGCAGTCCGTATGCAGAGTTCTTCGACATCCAGTGGCACTCCAGCGACCCACTGCTGGCCGGGCAACTGCTGTTGCCGTTCCTCGGCAGCGACTACGGCGTGGCGCTCAGGAATGGCGAGATACCACTGc > 2:147973/1‑150 (MQ=255) ctgctgGCCTGGGGACGGCGCAGTCCGTATGCAGAGTTCTTCGACATCCAGTGGCACTCCAGCGACCCACTGCTGGCCGGGCAACTGCTGTTGCCGTTCCTCGGCAGCGACTACGGCGTGGCGCTCAGGAATGGCGAGATACCACTGCAg < 1:147973/150‑1 (MQ=255) gcAGTCCGTATGCAGAGTTCTTCGACATCCAGTGGCACTCCAGCGACCCACTGCTGGCCGGGCAACTGCTGTTGCCGTTCCTCGGCAGCGACTACGGCGTGGCGCTCAGGAATGGCGAGATACCACTGCAGTTCGACAAACAGCAGGGgc > 1:206674/1‑150 (MQ=255) ccGTATGCAGAGTTCTTCGACATCCAGTGGCACTCCAGCGACCCACTGCTGGCCGGGCAACTGCTGTTGCCGTTCCTCGGCAGCGACTACGGCGTGGCGCTCAGGAATGGCGAGATACCACTGCAGTTCGACAAACAGCAGGGGctgctg > 1:25972/1‑150 (MQ=255) agagTTCTTCGACATCCAGTGGCACTCCAGCGACCCACTGCTGGCCGGGCAACTGCTGTTGCCGTTCCTCGGCAGCGACTACGGCGTGGCGCTCAGGAATGGCGAGATACCACTGCAGTTc < 1:332435/121‑1 (MQ=255) agagTTCTTCGACATCCAGTGGCACTCCAGCGACCCACTGCTGGCCGGGCAACTGCTGTTGCCGTTCCTCGGCAGCGACTACGGCGTGGCGCTCAGGAATGGCGAGATACCACTGCAGTTc > 2:332435/1‑121 (MQ=255) ttcGACATCCAGTGGCACTCCAGCGACCCACTGCTGGCCGGGCAACTGCTGTTGCCGTTTCTCGGCAGCGACTACTGCGTGGCGCTCAGGAATGGCGAGATACCCCTGCAGTTCGACACACAGCAGGGGCTGCTGCAAGTGGCCCATTAc > 1:433423/1‑150 (MQ=255) ttcGACATCCAGTGGCACTCCAGCGACCCACTGCTGGCCGGGCAACTGCTGTTGCCGTTCCTCGGCAGCGACTACGGCGTGGCGCTCAGGAATGGCGAGATACCACTGCAGTTCGACAAACAGCAGGGGCTGCTGCAAGTGGCCCATTAc > 2:171477/1‑150 (MQ=255) tCCAGCGACCCACTGCTGGCCGGGCAACTGCTGTTGCCGTTCCTCGGCAGCGACTACGGCGTGGCGCTCAGGAATGGCGAGATACCACTGCAGTTCGACAAACAGCAGGGGCTGCTGCAAGTGGCCCATTACGCGCATCGTTTCCCGATc < 2:25972/150‑1 (MQ=255) aGCGACCCACTGCTGGCCGGGCAACTGCTGTTGCCGTTCCTCGGCAGCGACTACGGCGTGGCGCTCAGGAATGGCGAGATACCACTGCAGTTCGACAAACAGCAGGGGCTGCTGCAAGTGGCCCATTACGCGCATCGTTTCCCGATCTGc > 1:547255/1‑150 (MQ=255) aGCGACCCACTGCTGGCCGGGCAACTGCTGTTGCCGTTCCTCGGCAGCGACTACGGCGTGGCGCTCAGGAATGGCGAGATACCACTGCAGTTCGACAAACAGCAGGGGCTGCTGCAAGTGGCCCATTACGCGCATCGTTTCCCGATCTGc < 1:171477/150‑1 (MQ=255) cccACTGCTGGCCGGGCAACTGCTGTTGCCGTTCCTCGGCAGCGACTACGGCGTGGCGCTCAGGAATGGCGAGATACCACTGCAGTTCGACAAACAGCAGGGGCTGCTGCAAGTGGCCCATTACGCGCATCGTTTCCCGATCTGCCCGGt > 1:11911/1‑150 (MQ=255) aCTGCGGGCCGGGCAACTGCTGTTGCCGTTCCTCGGCAGCGACTACGGCGTGGCGGTCAGGAATGGCGAGATCGGGCGGGATGGCGACAAACAGCAGGGGCTGCTGCAAGTGGCCCATTACGCGCATCGGTTCCCGATCTGCCCGGTCGa > 2:163015/1‑150 (MQ=255) gaggaacggCAACAGCAGTTGCCGTTCCTCGGCAGCGACTACGGCGTGGCGCTCAGGAATGGCGAGATACCACTGCAGTTCGACAAACAGCAGGGGCTGCTGCAAGTGGCCCATTACGCGCATCGTTTCCCGATCTGCCCGGTCGATTAc > 1:288420/8‑150 (MQ=255) cGGGCAACTGCTGTTGCCGTTCCTCGGCAGCGACTACGGCGTGGCGCTCAGGAATGGCGAGATACCACTGCAGTTCGACAAACAGCAGGGGCTGCTGCAAGTGGCCCATTACGCGCATCGTTTCCCGATCTGccc < 1:536230/135‑1 (MQ=255) cGGGCAACTGCTGTTGCCGTTCCTCGGCAGCGACTACGGCGTGGCGCTCAGGAATGGCGAGATACCACTGCAGTTCGACAAACAGCAGGGGCTGCTGCAAGTGGCCCATTACGCGCATCGTTTCCCGATCTGccc > 2:536230/1‑135 (MQ=255) acggCAACAGCAGTTGCCGTTCCTCGGCAGCGACTACGGCGTGGCGCTCAGGAATGGCga < 2:245645/58‑1 (MQ=38) acggCAACAGCAGTTGCCGTTCCTCGGCAGCGACTACGGCGTGGCGCTCAGGAATGGCga > 1:245645/3‑60 (MQ=39) aaCTGCTGTTGCCGTTCCTCGGCAGCGACTACGGCGTGGCGCTCAGGAATGGCGAGATACCACTGCAGTTCGACAAACAGCAGGGGCTGCTGCAAGTGGCCCATTACGCGCATCGTTTCCCGATCTGCCCGGTCGATTACGGCTGGATtc > 2:395209/1‑150 (MQ=255) aaCTGCTGTTGCCGTTCCTCGGCAGCGACTACGGCGTGGCGCTCAGGAATGGCGAGATACCACTGCAGTTCGACAAACAGCAGGGGCTGCTGCAAGTGGCCCATTACGCGCATCGTTTCCCGATCTGACCGAAAGATTACGGCTGGtttt > 2:31536/1‑149 (MQ=255) | CCTCGACACGGTGTCCAACCACATGGCCGTAGGCGGTGCCGACAACCCCTGGTGGCAAAGCCTGCTGGCCTGGGGACGGCGCAGTCCGTATGCAGAGTTCTTCGACATCCAGTGGCACTCCAGCGACCCACTGCTGGCCGGGCAACTGCTGTTGCCGTTCCTCGGCAGCGACTACGGCGTGGCGCTCAGGAATGGCGAGATACCACTGCAGTTCGACAAACAGCAGGGGCTGCTGCAAGTGGCCCATTACGCGCATCGTTTCCCGATCTGCCCGGTCGATTACGGCTGGATTC > NC_002947/4570435‑4570727 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |