Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,783,736 | C→T | 13.3% | R1208Q (CGG→CAG) | pvdJ ← | non‑ribosomal peptide synthetase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,783,736 | 0 | C | T | 13.3% | 68.9 / 3.8 | 31 | R1208Q (CGG→CAG) | pvdJ | non‑ribosomal peptide synthetase |
Reads supporting (aligned to +/- strand): ref base C (14/12); new base T (2/2); total (17/14) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.60e-01 |
GCGCCCATTGGCGCAGGGGTGCCGACCTGGACGGCAGGCTCACCGCCTGCCCTAGGCTAGCCTGCTGGTAGGCCGTCTGCAGGTCTTCGAACAGGATGCGCCAAGACACCCCATCCACCACCAGGTGATGCACCGCCAGCAACAGCCGTTGCTGACCATCGGCGAGTTCGAACAATGTCGCCCTGAACAGCTCGCCACGGGCCAGGTCGAGGCTGGCCTGCACCTCGTTGGCGGCGGTTTCTAGCGCTGCAAGGCTGTCCAGAGTGACTACCTGCAGGAGGGCCTGCACCGGT > NC_002947/4783590‑4783882 | gcgcCCATTGGCGCAGGGGTGCCGACCTGGACGGCAGGCTCACCGCCTGCCCTAGGCTAGCCTGCTGGTAGGCCGTCTGCAGGTCTTCGAACAGGATGCGCCAAGACACCCCATCCACCACCAGGTGATGCACCGCCAGCAACAGCGGtt > 1:26839/1‑150 (MQ=255) cATTGGCGCAGGGGTGCCGACCTGGACGGCAGGCTCACCGCCTGCCCTAGGCTAGCCTGCTGGTAGGCCGTCTGCAGGTCTTCGAACAGGATGCGCCAAGACACCCCATCCACCACCAGGTGATGCACCGCCAGCAACAGCCGTTGCTGa < 2:322687/150‑1 (MQ=255) gcgcAGGGGTGCCGACCTGGACGGCAGGCTCACCGCCTGCCCTAGGCTAGCCTGCTGGTAGGCCGTCTGCAGGTCTTCGAACAGGATGCGCCAAGACACCCCATCCACCACCAGGTGATGCACCGCCAGCAACAGCCGTTGCTGACCATc < 1:31013/150‑1 (MQ=255) ccGACCTGGACGGCAGGCTCACCGCCTGCCCTAGGCTAGCCTGCTGGTAGGCCGTCTGCAGGTCTTCGAACAGGATGCGCCAAGACACCCCATCCACCACCAGGTGATGCACCGCCAGCAACAGCCGTTGCTGACCATCGGCGAGTTCGa > 2:305989/1‑150 (MQ=255) cGACCTGGACGGCAGGCTCACCGCCTGCCCTAGGCTAGCCTGCTGGTAGGCCGTCTGCAGGTCTTCGAACAGGATGCGCCAAGACACCCCATCCACCACCAGGTGATGCACCGCCAGCAACAGCCGTTGCTGACCATCGGCGAGTTCGaa > 2:133876/1‑150 (MQ=255) ccTGGACGGCAGGCTCACCGCCTGCCCTAGGCTAGCCTGCTGGTAGGCCGTCTGCAGGTCTTCGAACAGGATGCGCCAAGACACCCCATCCACCACCAGGTGATGCACCGCCAGCAACGGCTGTTGCTggcggt > 1:321845/1‑129 (MQ=255) ccTGGACGGCAGGCTCACCGCCTGCCCTAGGCTAGCCTGCTGGTAGGCCGTCTGCAGGTCTTCGAACAGGATGCGCCAAGACACCCCATCCACCACCAGGTGATGCACCGCCAGCAACGGCTGTTGCTggcggt < 2:321845/134‑6 (MQ=255) aGGCTCACCGCCTGCCCTAGGCTAGCCTGCTGGTAGGCCGTCTGCAGGTCTTCGAACAGGATGCGCCAAGACACCCCATCCACCACCAGGTGATGCACCGCCAGCAACAGCCGTTGCTGACCATCGGCGAGTTc < 2:216999/134‑1 (MQ=255) aGGCTCACCGCCTGCCCTAGGCTAGCCTGCTGGTAGGCCGTCTGCAGGTCTTCGAACAGGATGCGCCAAGACACCCCATCCACCACCAGGTGATGCACCGCCAGCAACAGCCGTTGCTGACCATCGGCGAGTTc > 1:216999/1‑134 (MQ=255) gCTCACCGCCTGCCCTAGGCTAGCCTGCTGGTAGGCCGTCTGCAGGTCTTCGAACAGGATGCGCCAAGACACCCCATCCACCACCAGGTGATGCACCGCCAGCAACAGCCGTTGCTGACCATCGGCGAGTTCGAACAATGTCGCCCTGaa < 1:390307/150‑1 (MQ=255) ccGCCTGCCCTAGGCTAGCCTGCTGGTAGGCCGTCTGCAGGTCTTCGAACAGGATGCGCCAAGACACCCCATCCACCACCAGGTGATGCACCGCCAGCAACAGCCGTTGCTGACCa > 2:83905/1‑116 (MQ=255) ccGCCTGCCCTAGGCTAGCCTGCTGGTAGGCCGTCTGCAGGTCTTCGAACAGGATGCGCCAAGACACCCCATCCACCACCAGGTGATGCACCGCCAGCAACAGCCGTTGCTGACCa < 1:83905/116‑1 (MQ=255) gTAGGCCGTCTGCAGGTCTTCGAACAGGATGCGCCAAGACACCCCATCCACCACCAGGTGATGCACCGCCAGCAACAGCCGTTGCTGACCATCGGCGAGTTCGAACAATGTCGCCCTGAACAGCTCGCCACGGGCCAGGTCGAGGCTGGc < 1:305989/150‑1 (MQ=255) gCCGTCTGCAGGTCTTCGAACAGGATGCGCCAAGACACCCCATCCACCACCAGGTGATGCACCGCCAGCAACAGCCGTTGCTGACCATCGGCGAGTTCGAACAATGTCGCCCTGAACAGCTCGCCACGGGCCAGGTCGAGGCTGGCCTGc > 2:326263/1‑150 (MQ=255) gTCTTCGAACAGGATGCGCCAAGACACCCCATCCACCACCAGGTGATGCACCGCCAGCAACAGCCGTTGCTGACCATCGGCGAGTTCGAACAAt > 1:427836/1‑94 (MQ=255) gTCTTCGAACAGGATGCGCCAAGACACCCCATCCACCACCAGGTGATGCACCGCCAGCAACAGCCGTTGCTGACCATCGGCGAGTTCGAACAAt < 2:427836/94‑1 (MQ=255) gTCTTCGAACAGGATGCGCCAAGACACCCCATCCACCACCAGGTGATGCACCGCCAGCAACAGCCGTTGCTGACCATCGGCGAGTTCGAACAATGTCGCCCTGAACAGCTCGCCACGGGCCAGGTCGAGGCTGGCCTGCACCTCGTTggc > 2:55310/1‑150 (MQ=255) tGCGCCAAGACACCCCATCCACCACCAGGTGATGCACCGCCAGCAACAGCCGt > 1:429121/1‑53 (MQ=255) tGCGCCAAGACACCCCATCCACCACCAGGTGATGCACCGCCAGCAACAGCCGt < 2:429121/53‑1 (MQ=255) gcCAAGACACCCCATCCACCACCAGGTGATGCACCGCCAGCAACAGCCGTTGCTGACCATCGGCGAGTTCGAACAATGTCGCCCTGAACAGCTCGCCACGGGCCAGGTCGAGGCTGGCCTGCACCTCGTTGGCGGCGGTTTCTAGCGCTg > 1:43684/1‑150 (MQ=255) cccATCCACCACCAGGTGATGCACCGCCAGCAACAGCCGTTGCTGACCATCGGCGAGTTCGAACAATGTCGCCCTGAACAGCTCGCCACGGGCCAGGTCGAGGCTGGCCTGCACCTCGTTGGCGGCGGTTTCTAGCGCTGCAAGGCTGTc > 2:560697/1‑150 (MQ=255) cccATCCACCACCAGGTGATGCACCGCCAGCAACAGCCGTTGCTGACCATCGGCGAGTTCGAACAATGTCGCCCTGAACAGCTCGCCACGGGCCAGGTCGAGGCTGGCCTGCACCTCGTTGGCGGCGGTTTCTAGCGCTGCAAGGCTGTc > 2:21788/1‑150 (MQ=255) tCCACCACCAGGTGATGCACCGCCAGCAACAGCCGTTGCTGACCATCGGCGAGTTCGAACAATGTCGCCCTGAACAGCTCGCCACGGGCCAGGTCGAGGCTGGCCTGCACCTCGTTGGCGGCGGTTTCTAGCGCTGCAAGGCTGTCCaga > 2:28864/1‑150 (MQ=255) caccaccaGGTGATGCACCGCCAGCAACAGCCGTTGCTGACCATCGGCGAGTTCGAACAATGTCGCCCTGAACAGCTCGCCACGGGCCAGGTCGAGGCTGGCCTGCACCTCGTTGGCGGCGGTTTCTAGCGCTGCaa < 1:520166/137‑1 (MQ=255) caccaccaGGTGATGCACCGCCAGCAACAGCCGTTGCTGACCATCGGCGAGTTCGAACAATGTCGCCCTGAACAGCTCGCCACGGGCCAGGTCGAGGCTGGCCTGCACCTCGTTGGCGGCGGTTTCTAGCGCTGCaa > 2:520166/1‑137 (MQ=255) tGATGCACCGCCAGCAACAGCCTTTGCTGACCATCGGCGAGTTCGAACAATGTCGCCCTGAACAGCTCGCCACGGGCCAGGTCGAGGCTGGCCTGCACCTCGTTGGCGGCGGTTTCTAGCGCTGCAAGGCTGTCCAGAGTGACTACCTGc < 1:28864/150‑1 (MQ=255) ggtcAGCAACGGCTGTTGCTGGCCATCGGCGAGTTCGAACAATGTCGCCCTGAACAGCTCGCCACGGGCCAGGTCGAGGCTGGCCTGCACCTCGTTGGCGGCGGTTTCTAGCGCTGCAAGGCTGTCCAGAGTGACTACCTGCAGGAGGGc < 2:464219/147‑1 (MQ=255) ggtcAGCAACGGCTGTTGCTGGCCATCGGCGAGTTCGAACAATGTCGCCCTGAACAGCTCGCCACGGGCCAGGTCGAGGCTGGCCTGCACCTCGTTGGCGGCGGTTTCTAGCGCTGCAAGGCTGTCCAGAGTGACTACCTGCAGGAGGGc > 1:464219/4‑150 (MQ=255) aCAGCCGTTGCTGACCATCGGCGAGTTCGAACAATGTCGCCCTGAACAGCTCGCCACGGGCCAGGTCGAGGCTGGCCTGCACCTCGTTGGCGGCGGTTTCTAGCGCTGCAAGGCTGTCCAGAGTGACTACCTGCagga > 2:519962/1‑138 (MQ=255) aCAGCCGTTGCTGACCATCGGCGAGTTCGAACAATGTCGCCCTGAACAGCTCGCCACGGGCCAGGTCGAGGCTGGCCTGCACCTCGTTGGCGGCGGTTTCTAGCGCTGCAAGGCTGTCCAGAGTGACTACCTGCagga < 1:519962/138‑1 (MQ=255) aGCCGTTGCTGACCATCGGCGAGTTCGAACAATGTCGCCCTGAACAGCTCGCCACGGGCCAGGTCGAGGCTGGCCTGCACCTCGTTGGCGGCGGTTTCTAGCGCTGCAAGGCTGTCCAGAGTGACTACCTGCAGGAGGGCCTGCACCGgt < 1:560697/150‑1 (MQ=255) | GCGCCCATTGGCGCAGGGGTGCCGACCTGGACGGCAGGCTCACCGCCTGCCCTAGGCTAGCCTGCTGGTAGGCCGTCTGCAGGTCTTCGAACAGGATGCGCCAAGACACCCCATCCACCACCAGGTGATGCACCGCCAGCAACAGCCGTTGCTGACCATCGGCGAGTTCGAACAATGTCGCCCTGAACAGCTCGCCACGGGCCAGGTCGAGGCTGGCCTGCACCTCGTTGGCGGCGGTTTCTAGCGCTGCAAGGCTGTCCAGAGTGACTACCTGCAGGAGGGCCTGCACCGGT > NC_002947/4783590‑4783882 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |