Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,191,879 | G→A | 12.1% | D96N (GAC→AAC) | PP_4572 → | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,191,879 | 0 | G | A | 12.1% | 80.6 / 3.8 | 33 | D96N (GAC→AAC) | PP_4572 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base G (13/16); new base A (2/2); total (15/18) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.75e-01 |
AGGTAGCCGATGTGGACCTGGCCTGGTGGCGCGGTGCCTATCAGATAAACGGGCTGAAAATCGTCAAGACCACCGGCAAGGTGCCCGTACCGTTTCTCGACGCCCCACTGATCGACCTCTCGGTGAGCTGGCATTCGTTGTGGTACGACAAGGCAGTGGTGGCGGAGGTGACCTTCGTGCACCCCGAGCTGAACTTTGTCGACGGTGGTAGCAAACAGGCGTCGCAGACCGGCCAAGGTACTGACTGGCGCCAGCAGCTGGAAAAACTCCTGCCCATCACCCTCAACGAAGTGC > NC_002947/5191733‑5192026 | aGGTAGCCGATGTGGACCTGGCCTGGTGGCGCGGTGCCTATCAGATAAACGGGCTGAAAATCGTCAAGACCACCGGCAAGGTGCCCGTACCGTTTCTCGACGCCCCACTGATCGACCTCTCGGTGAGCTGGCATTCGTTGTGGTACGACa > 2:511949/1‑150 (MQ=255) ggTAGCCGATGTGGACCTGGCCTGGTGGCGCGGTGCCTATCAGATAAACGGGCTGAAAATCGTCAAGACCACCGGCAAGGTGCCCGTACCGTTTCTCGACGCCCCACTGATCGACCTCTCGGTGAGCTGGCATTCGTTGTGGTACGACaa < 1:147463/150‑1 (MQ=255) tAGCCGATGTGGACCTGGCCTGGTGGCGCGGTGCCTATCAGATAAACGGGCTGAAAATCGTCAAGACCACCGGCAAGGTGCCCGTACCGTTTCTCGACGCCCCACTGATCGACCTCTCGGTGAGCTGGCATTCGTTTTGGTACGACAAgg > 2:324631/1‑150 (MQ=255) aTGTGGACCTGGCCTGGTGGCGCGGTGCCTATCAGATAAACGGGCTGAAAATCGTCAAGACCACCGGCAAGGTGCCCGTACCGTTTCTCGACGCCCCACTGANCGACCTNTCGGTGAGCTGGCATTCGTTGTGGTACGACAAGGCAgtgg < 1:324523/150‑1 (MQ=255) ctggcctggTGGCGCGGTGCCTATCAGATAAACGGGCTGAAAATCGTCAAGACCACCGGCAAGGTGCCCGTACCGTTTCTCGACGCCCCACTGATCGACCTCTCGGTGAGCTGGCATTCGTTGTGGTACGACAAGGCAGTGGTGGCGGAg < 2:470212/150‑1 (MQ=255) ggcctggTGGCGCGGTGCCTATCAGATAAACGGGCTGAAAATCGTCAAGACCACCGGCAAGGTGCCCGTACCGTTTCTCGACGCCCCACTGATCGACCTCTCGGTGAGCTGGCATTCGTTGTGGTACGACAAGGCAGTGGTGGCGGAGGt < 2:427749/150‑1 (MQ=255) gcctagTGGAGCGGTGCCTATCAGATAAACGGGCTGAAAATCGTCAAGACCACCGGCAAGGTGCCCGTACCGTTTCTCGACGCCCCACTGATCGACCTCTCGGTGAGCTGGCATTCGTTGTGGTACGACAAGGCAGTGGTGGCGGAGGTg > 2:34934/1‑150 (MQ=255) gcgcGGTGCCTATCAGATAAACGGGCTGAAAATCGTCAAGACCACCGGCAAGGTGCCCGTACCGTTTCTCGACGCCCCACTGATCGACCTCTCGGTGAGCTGGCATTCGTTGTGGTACGACAAGGCAGTGGTGGCGGAGGTGACCTTCGt < 1:263739/150‑1 (MQ=255) gCCTATCAGATAAACGGGCTGAAAATCGTCAAGACCACCGGCAAGGTGCCCGTACCGTTTCTCGACGCCCCACTGATCGACCTCTCGGTGAGCTGGCATTCGTTGTGGTACGACAAGGCAGTGGTGGCGGAgg > 2:80866/1‑133 (MQ=255) gCCTATCAGATAAACGGGCTGAAAATCGTCAAGACCACCGGCAAGGTGCCCGTACCGTTTCTCGACGCCCCACTGATCGACCTCTCGGTGAGCTGGCATTCGTTGTGGTACGACAAGGCAGTGGTGGCGGAgg < 1:80866/133‑1 (MQ=255) aTCAGATAAACGGGCTGAAAATCGTCAAGACCACCGGCAAGGTGCCCGTACCGTTTCTCGACGCCCCACTGATCGACCTCTCGGTGAGCTGGCATTCGTTGTGGTACGACAAGGCAGTGGTGGCGGAGGTGACCTTCGTGCACCCCGAGc < 2:436873/150‑1 (MQ=255) tCAGATAAACGGGCTGAAAATCGTCAAGACCACCGGCAAGGTGCCCGTACCGTTTCTCGACGCCCCACTGATCGACCTCTCGGTGAGCTGGCATTCGTTGTGGTACGACAAGGCAGTGGTGGCGGAGGTGACCTTCGTGCACCCCGAGCt > 2:403450/1‑150 (MQ=255) aaaTCGTCAAGACCACCGGCAAGGTGCCCGTACCGTTTCTCGACGCCCCACTGATCGACCTCTCGGTGGACGTGCATTCGTTGTGGTACGACAAGGCAGTGGTGGCGGAGGTGACCTTCGTGCACCCCGAGCTGAACTTTGTCGACggtg < 1:34934/150‑1 (MQ=255) tCAAGACCACCGGCAAGGTGCCCGTACCGTTTCTCGACGCCCCACTGATCGACCTCTCGGTGAGCTGGCATTCGTTGTGGTACGACAAGGCAGTGGTGGCGGAGGTGACCTTCGTGCACCCCGAGCTGAACTTTGTCGACGGTGGTAGCa > 1:272828/1‑150 (MQ=255) aGGTGCCCGTACCGTTTCTCGACGCCCCACTGATCGACCTCTCGGTGAGCTGGCATTCGTTGTGGTACGACAAGGCAGTGGTGGCGGAGGTGACCTTCGTGCACCCCGAGCTGAACTTTGTCGACGGTGGTAGCAAACAGGCGTCGCAGa < 1:511949/150‑1 (MQ=255) ggTGCCCGTACCGTTTCTCGACGCCCCACTGATCGACCTCTCGGTGAGCTGGCATTCGTTGTGGTACAACAAGGCAGTGGTGGCGGAGGTGACCTTCGTGCACCCCGAGCTGAACTTTGTCGACGGTGGTAGCAAACAGGCGTCGCAGAc > 2:345919/1‑150 (MQ=255) ggTGCCCGTACCGTTTCTCGACGCCCCACTGATCGACCTCTCGGTGAGCTGGCATTCGTTGTGGTACAACAAGGCAGTGGTGGCGGAGGTGACCTTCGTGCACCCCGAGCTGAACTTTGTCGACGGTGGTAGCAAACAGGCGTCGCAGAc > 2:345956/1‑150 (MQ=255) gTGCCCGTACCGTTTCTCGACGCCCCACTGATCGACCTCTCGGTGAGCTGGCATTCGTTGTGGTACGACAAGGCAGTGGTGGCGGAGGTGACCTTCGTGCACCCCGAGCTGAACTTTGTCGACGGTGGTAGCAAACAGGCGTCGCAGAcc < 2:162022/150‑1 (MQ=255) tACCGTTTCTCGACGCCCCACTGATCGACCTCTCGGTGAGCTGGCATTCGTTGTGGTACGACAAGGCAGTGGTGGCGGAGGTGACCTTCGTGCACCCCGAGCTGAACTTTGTCGACGGTGGTAGCAAACAGGCGTCGCAGACCGGCCAAg < 2:410909/150‑1 (MQ=255) gTTTCTCGACGCCCCACTGATCGACCTCGCGGTGAGCTGGCATTCGTTGTGGTACGACAAGGCAGTGGTGGCGGAGGTGACCTTCGTGCACCCCGAGCTGAACTTTGTCGACGGTGGTAGCAAACAGGCGTCGCAGACCGGCCAAGGTac < 1:204968/150‑1 (MQ=255) cGACGCCCCACTGATCGACCTCTCGGTGAGCTGGCATTCGTTGTGGTACGACAAGGCAGTGGTGGCGGAGGTGACCTTCGTGCACCCCGAGCTGAACTTTGTCGACGGTGGTAGCAAAACATCCTCGCAGACCGGCCAAGGTactgactg < 1:158728/150‑1 (MQ=255) gACGCCCCACTGATCGACCTCTCGGTGAGCTGGCATTCGTTGTGGTACGACAAGGCAGTGGTGGCGGAGGTGACCTTCGTGCACCCCGAGCTGAACTTTGTCGACGGTGGTAGCAAACAGGCGTCGCAGACCGGCCAAGGTACTGACTgg > 1:487121/1‑150 (MQ=255) aCTGATCGACCTCTCGGTGAGCTGGCATTCGTTGTGGTACGACAAGGCAGTGGTGGCGGAGGTGACCTTCGTGCACCCCGAGCTGAACTTTGTCGACGGTGGTAGCAAACAGGCGTCGCAGACCGGCCAAGGTact < 1:428761/136‑1 (MQ=255) aCTGATCGACCTCTCGGTGAGCTGGCATTCGTTGTGGTACGACAAGGCAGTGGTGGCGGAGGTGACCTTCGTGCACCCCGAGCTGAACTTTGTCGACGGTGGTAGCAAACAGGCGTCGCAGACCGGCCAAGGTact > 2:428761/1‑136 (MQ=255) aCCTCTCGGTGAGCTGGCATTCGTTGTGGTACAACAAGGCAGTGGTGGCGGAGGTGACCTTCGTGCACCCCGAGCTGAACTTTGTCGACGGTGGTAGCAAACAGGCGTCGCAGACCGGCCAAGGTACTGACTGGCGCCAGCAGCTGGaaa < 1:345919/150‑1 (MQ=255) aCCTCTCGGTGAGCTGGCATTCGTTGTGGTACAACAAGGCAGTGGTGGCGGAGGTGACCTTCGTGCACCCCGAGCTGAACTTTGTCGACGGTGGTAGCAAACAGGCGTCGCAGACCGGCCAAGGTACTGACTGGCGCCAGCAGCTGGaaa < 1:345956/150‑1 (MQ=255) tcGGTGAGCTGGCATTCGTTGTGGTACGACAAGGCAGTGGTGGCGGAGGTGACCTTCGTGCACCCCGAGCTGAACTTTGTCGACGGTGGTAGCAAACAGGCGTCGCAGACCGGCCAAGGTACTGACTGGCGCCAGCAGCTGGAAAAACTc > 2:123911/1‑150 (MQ=255) tGGCATTCGTTGTGGTACGACAAGGCAGTGGTGGCGGAGGTGACCTTCGTGCACCCCGAGCTGAACTTTGTCGACGGTGGTAGCAAACAGGCGTCGAAGACCGGCCAAGGTACTGACTGGCGCCAGCAGCTGGAAAAACTCCTGCCCATc > 2:298687/1‑150 (MQ=255) tgGTACGACAAGGCAGTGGTGGCGGAGGTGACCTTCGTGCACCCCGAGCTGAACTTTGTCGACGGTGGTAGCAAACAGGCGTCGCAGACCGGCCAAGGTACTGACTGGCGCCAGCAGCTGGACAAACTCCTGCCCATCACCCTCAACGaa > 2:373306/1‑150 (MQ=255) gTACGACAAGGCAGTGGTGGCGGAGGTGACCTTCGTGCACCCCGAGCTGAACTTTGTCGACGGTGGTAGCAAACAGGCGTCGCAGACCGGCCAAg < 2:117801/95‑1 (MQ=255) gTACGACAAGGCAGTGGTGGCGGAGGTGACCTTCGTGCACCCCGAGCTGAACTTTGTCGACGGTGGTAGCAAACAGGCGTCGCAGACCGGCCAAg > 1:117801/1‑95 (MQ=255) gTACGACAAGGCAGTGGTGGCGGAGGTGACCTTCGTGCACCCCGAGCTGAACTTTGTCGACGGTGGTAGCAAACAGGCGTCGCAGACCGGCCAAGGTACTGACTGGCGCCAGCAGCTGGAAAAACTCCTGCCCATCACCCTCAACGAAGt > 2:323217/1‑150 (MQ=255) aCGACAAGGCAGTGGTGGCGGAGGTGACCTTCGTGCACCCCGAGCTGAACTTTGTCGACGGTGGTAGCAAACAGGCGTCGCAGACCGGCCAAGGTACTGACTGGCGCCAGCAGCTGGAAAAACTCCTGCCCATCACCCTCAACGAAGTGc < 1:403450/150‑1 (MQ=255) | AGGTAGCCGATGTGGACCTGGCCTGGTGGCGCGGTGCCTATCAGATAAACGGGCTGAAAATCGTCAAGACCACCGGCAAGGTGCCCGTACCGTTTCTCGACGCCCCACTGATCGACCTCTCGGTGAGCTGGCATTCGTTGTGGTACGACAAGGCAGTGGTGGCGGAGGTGACCTTCGTGCACCCCGAGCTGAACTTTGTCGACGGTGGTAGCAAACAGGCGTCGCAGACCGGCCAAGGTACTGACTGGCGCCAGCAGCTGGAAAAACTCCTGCCCATCACCCTCAACGAAGTGC > NC_002947/5191733‑5192026 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |