Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,662,472 | C→T | 13.8% | A71A (GCC→GCT) | PP_4969 → | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,662,472 | 0 | C | T | 13.8% | 64.9 / 3.9 | 29 | A71A (GCC→GCT) | PP_4969 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base C (14/11); new base T (2/2); total (16/13) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.09e-01 |
CTGCCCAGCCGGATGCCGGCCTGACCGGTTGCGCCGCCAAGCGCAGCGCCATCGAAAACCAGCTGAAAATTGCCCGTGACCACGGCAACAGCGACCAGGTTGGAGGGCTGGAGGAAGCCCTGCGCGGTGTGGACAACTGCACCGACGCCAGCCTGCGCAAGGAACGTGAGCAGAAGGTGCTCGATGCGCGTCACGAAGTGGCGCAGCGGGAAAAGGACTTGAAGAAGGCAGAGAAGAAAGGCGACGCCGAGAAGATCAACAAGCGCAAGGACAAGCTGGCCGAGTCGCGTAAAGAG > NC_002947/5662324‑5662619 | cTGCCCAGCCGGATGCCGGCCTGACCGGTTGCGCCGCCAAGCGCAGCGCCATCGAAAACCAGCTGAAAATTGCCCGTGACCACGGCAACAGCGACCAGGTTGGAGGGCTGGAGGAAGCCCTGCGCGGTGTGGACAACTGCACCGACGCCa > 2:491268/1‑150 (MQ=255) agcgcagcgcCATCGAAAACCAGCTGAAAATTGCCCGTGACCACGGCAACAGCGACCAGGTTGGAGGGCTGGAGGAAGCCCTGCGCGGTGTGGACAACTGCACCGACGCCAGCCTGCGCAAGGAACGTGAGCAGAAGGTGCTCGATgcgc > 2:70108/1‑150 (MQ=255) cagcgcCATCGAAAACCAGCTGAAAATTGCCCGTGACCACGGCAACAGCGACCAGGTTGGAGGGCTGGAGGAAGCCCTGCGCGGTGTGGACAACTGCACCGACGCCAGCCTGCGCAAGGAACGTGAGCAGAAGGTGCTCGATGCGCGTCa < 1:491268/150‑1 (MQ=255) ccATCGAAAACCAGCTGAAAATTGCCCGTGACCACGGCAACAGCGACCAGGTTGGAGGGCTGGAGGAAGCCCTGCGCGGTGTGGACAACTGCACCGACGCCAGCCTGCGCAAGGAACGTGa > 2:431428/1‑121 (MQ=255) ccATCGAAAACCAGCTGAAAATTGCCCGTGACCACGGCAACAGCGACCAGGTTGGAGGGCTGGAGGAAGCCCTGCGCGGTGTGGACAACTGCACCGACGCCAGCCTGCGCAAGGAACGTGa < 1:431428/121‑1 (MQ=255) aTCGAAAACCAGCTGAAAATTGCCCGTGACCACGGCAACAGCGACCAGGTTGGAGGGCTGGAGGAAGCCCTGCGCGGTGTGGACAACTGCACCGACGCCAGCCTGCGCAAGGAACGTGAGCAGAAGGTGCTCGATGCGCGTCACGAAGTg < 1:512259/150‑1 (MQ=255) gAAAACCAGCTGAAAATTGCCCGTGACCACGGCAACAGCGACCAGGTTGGAGGGCTGGAGGAAGCCCTGCGCGGTGTGGACAACTGCACCGACGCCAGCCTGCGCAAGGAACGTGAGCAGAAGGTGCTCGATGCGCGTCACGAAGTGgcg > 1:182841/1‑150 (MQ=255) tGAAAATTGCCCGTGACCACGGCAACAGCGACCAGGTTGGAGGGCTGGAGGAAGCCCTGCGCGGTGTGGACAACTGCACCGACGCCAGCCTGCGCAAGGAACGTGAGCAGAAGGTGCTCGATGCGCGTCACGAAGTGGCGCAGCGGGaaa > 1:113177/1‑150 (MQ=255) ttGCCCGTGACCACGGCAACAGCGACCAGGTTGGAGGGCTGGAGGAAGCCCTGCGCGGTGTGGACAACTGCACCGACGCCAGCCTGCGCAAGGAACGTGAGCAGAAGGTGCTCGATGCGCGTCACGAAGTGGCGCAGCGGGAAAAGGACt < 1:533727/150‑1 (MQ=255) ggCAACAGCGACCAGGTTGGAGGGCTGGAGGAAGCCCTGCGCGGTGTGGACAACTGCACCGACGCCAGCCTGCGCAAGGAACGTGAGCAGAAGGTGCTCGATGCGCGTCACGAAGTGGCGCAGCGGGAAAAGGACTTGAAGAAGGCagag > 2:527464/1‑150 (MQ=255) gTTGGAGGGCTGGAGGAAGCCCTGCGCGGTGTGGACAACTGCACCGACGCCAGCCTGCGCAAGGAACGTGAGCAGAAGGTGCTCGATGCGCGTCACGAAGTGGCGCAGCGGGACAAGGACTTGAAGGAGGCAGAGAAGAAAGGGGACGcc > 1:197010/1‑150 (MQ=255) gAGGGCAGGAGGAAGTCCTGCGCGGGGGGGACAACTGCACCGACGCCAGCCTGCGCAAGGAACGTGAGCAGAAGGTGCTCGATGCGCGTCACGAAGTGGCGCAGCGGGAAAAGGACTTGAAGAAGGCAGACAAGAAAGGCGACGCCgaga > 2:37542/1‑150 (MQ=255) gaAGCCCTGCGCGGTGTGGACAACTGCACCGACGCCAGCCTGCGCAAGGAACGTGAGCAGAAGGTGCTCGATGCGCGTCACGAAGTGGCGCAGCGGGAAAAGGACTTGAAGAAGGCAGAGAAGAAAg < 1:147569/127‑1 (MQ=255) gaAGCCCTGCGCGGTGTGGACAACTGCACCGACGCCAGCCTGCGCAAGGAACGTGAGCAGAAGGTGCTCGATGCGCGTCACGAAGTGGCGCAGCGGGAAAAGGACTTGAAGAAGGCAGAGAAGAAAg > 2:147569/1‑127 (MQ=255) gaAGCCCTGCGCGGTGTGGACAACTGCACCGACGCCAGCCTGCGCAAGGAACGTGAGCAGAAGGTGCTCGATGCGCGTCACGAAGTGGCGCAGCGGGAAAAGGACTTGAAGAAGGCAGAGAAGAAAGGCGACGCCGAGAAGATCAACAAg > 1:522193/1‑150 (MQ=255) aaGCCCTGCGCGGTGTGGACAACTGCACCGACGCCAGCCTGCGCAAGGAACGTGAGCAGAAGGTGCTCGATGCGCGTCACGAAGTGGCGCAGCGGGAAAAGGACTTGAAGAAGGCAGAGAAGAAAGGCGACGCCGAGAAGATCAACAAgc < 1:70108/150‑1 (MQ=255) cTGCGCGGTGTGGACAACTGCACCGACGTCAGCCTGCGCAAGGAACGTGAGCAGAAGGTGCTCGATGCGCGTCACGAAGTGGCGCAGCGGGAAAAGGAATTGAAGAAGGCAGAGAAGAAAGGCGACGCCGAGAAGTTCAACAAGCGCAAg < 2:362301/150‑1 (MQ=255) cgcgGTGTGGACAACTGCACCGACGCCAGCCTGCGCAAGGAACGTGAGCAGAAGGTGCTCGATGCGCGTCACGAAGTGGCGCAGCGGGAAAAGGACTTGAAGAAGGCAGAGAAGAAAGGCGACGCCGAGAAGATCAACAAGCGCAAGGAc < 2:522193/150‑1 (MQ=255) ggACAACTGCACCGACGCCAGCCTGCGCAAGGAACGTGAGCAGAAGGTGCTCGATGCGCGTCACGAAGTGGCGCAGCGGGAAAAGGACTTGAAGAAGGCAGAGAAGAAAGGCGACGCCGAGAAGATCAACAAGCGCAAGGACAAGCTGGc < 1:527464/150‑1 (MQ=255) aaCTGCACCGACGCCAGCCTGCGCAAGGAACGTGAGCAGAAGGTGCTCGATGCGCGTCACGAAGTGGCGCAGCGGGAAAAGGACTTGAAGAAGGCAGAGAAGAAAGGCGACGCCGAGAAGATCAACAAGCGCAAGGACAAGCTGGCCGAg > 2:519650/1‑150 (MQ=255) tGCACCGACGCCAGCCTGCGCAAGGAACGTGAGCAGAAGGTGCTCGATGCGCGTCACGAAGTGGCGCAGCg < 2:307751/71‑1 (MQ=255) tGCACCGACGCCAGCCTGCGCAAGGAACGTGAGCAGAAGGTGCTCGATGCGCGTCACGAAGTGGCGCAGCg > 1:307751/1‑71 (MQ=255) aCCGACGCTAGCCTGCGCAAGGAACGTGAGCAGAAGGTGCTCGATGCGCGTCACGAAGTGGCGCAGCGGGAAAAGGACTTGAAGAAGGCAGAGAAGAAAGGCGACGCCGAGAAGATcaacaa < 1:390633/122‑1 (MQ=255) aCCGACGCTAGCCTGCGCAAGGAACGTGAGCAGAAGGTGCTCGATGCGCGTCACGAAGTGGCGCAGCGGGAAAAGGACTTGAAGAAGGCAGAGAAGAAAGGCGACGCCGAGAAGATcaacaa > 2:390511/1‑122 (MQ=255) aCCGACGCTAGCCTGCGCAAGGAACGTGAGCAGAAGGTGCTCGATGCGCGTCACGAAGTGGCGCAGCGGGAAAAGGACTTGAAGAAGGCAGAGAAGAAAGGCGACGCCGAGAAGATcaacaa > 2:390633/1‑122 (MQ=255) aCCGACGCTAGCCTGCGCAAGGAACGTGAGCAGAAGGTGCTCGATGCGCGTCACGAAGTGGCGCAGCGGGAAAAGGACTTGAAGAAGGCAGAGAAGAAAGGCGACGCCGAGAAGATcaacaa < 1:390511/122‑1 (MQ=255) cGACGCCAGCCTGCGCAAGGAACGTGAGCAGAAGGTGCTCGATGCGCGTCACGAAGTGGCGCAGCGGGAAAAGGACTTGAAGAAGGCAGAGAAGAAAGGCGACGCCGAGAAGATCAACAAGCGCAAGGACAAGCTGGCCGAGTCGCGTaa > 1:305909/1‑150 (MQ=255) gACGCCAGCCTGCGCAAGGAACGTGAGCAGAAGGTGCTCGATGCGCGTCACGAAGTGGCGCAGCGGGAAAAGGACTTGAAGAAGGCAGAGAAGAAAGGCGACGCCGAGAAGATCAACAAGCGCAAGGACAAGCTGGCCGAGTCGCGTaaa < 2:305909/150‑1 (MQ=255) gCCAGCCTGCGCAAGGAACGTGAGCAGAAGGTGCTCGATGCGCGTCACGAAGTGGCGCAGCGGGAAAAGGACTTGAAGAAGGCAGAGAAGAAAGGCGACGCCGAGAAGATCAACAAGCGCAAGGACAAGCTGGCCGAGTCGCGTAAagag > 1:528640/1‑150 (MQ=255) | CTGCCCAGCCGGATGCCGGCCTGACCGGTTGCGCCGCCAAGCGCAGCGCCATCGAAAACCAGCTGAAAATTGCCCGTGACCACGGCAACAGCGACCAGGTTGGAGGGCTGGAGGAAGCCCTGCGCGGTGTGGACAACTGCACCGACGCCAGCCTGCGCAAGGAACGTGAGCAGAAGGTGCTCGATGCGCGTCACGAAGTGGCGCAGCGGGAAAAGGACTTGAAGAAGGCAGAGAAGAAAGGCGACGCCGAGAAGATCAACAAGCGCAAGGACAAGCTGGCCGAGTCGCGTAAAGAG > NC_002947/5662324‑5662619 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |