| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,918,681 | G→A | 16.0% | T84I (ACC→ATC) | PP_5188 ← | AsnC/Lrp family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,918,681 | 0 | G | A | 16.0% | 54.8 / 3.9 | 25 | T84I (ACC→ATC) | PP_5188 | AsnC/Lrp family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (9/12); new base A (2/2); total (11/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGGCACGTTCGACAGTTTTTCGAAGAAGAACCGCTCGTAGGCCTCGATGTCCGACGTGACGATTCGCAGCAGAAAGTCCACGGCCCCCATCAGCACATAACACTCCAGCACCTCAGGGAACCCGCGGATCGCCTCGGTGAACTCGGTAAAGTTGGAGCGCCCATGGGCGTTCAGTTTCACTTCGGCGAAAATCTGCGTGTTCAGGCCGACCTTCTTGCGGTCCAGCAAGGTCACCTGCCCACGAATCACCCCCTCTTCCTTCAAGCGCTGAATGCGCCGCCAGCACGGCGATT > NC_002947/5918536‑5918828 | cGGCACGTTCGACAGTTTTTCGAAGAAGAACCGCTCGTAGGCCTCGATGTCCGACGTGACGATTCGCAGCAGAAAGTCCACGGCCCCCATCAGCACATAACACTCCAGCACCTCAGGGAACCCGCGGATCGCATCGGTGAACTCGGTaaa < 2:266072/150‑1 (MQ=255) ttCGAAGAAGAACCGCTCGTAGGCCTCGATGTCCGACGTGACGATTCGCAGCAGAAAGTCCACGGCCCCCATCAGCACATAACACTCCAGCACCTCAGGGAACCCGCGGATCGCCTCGGTGAACTCGGTAAAGTTGGAGCGCCCATGGGc < 2:59098/150‑1 (MQ=255) gaagaagaaCCGCTCGTAGGCCTCGATGTCCGACGTGACGATTCGCAGCAGAAAGTCCACGGCCCCCATCAGCACATAACACTCCAGCACCTCAGGGAACCCGCGGATCGCCTCGGTGAACTCGGTAAAGTTGGAGCGCCCATGGGCGtt > 1:35573/1‑150 (MQ=255) gaagaagaaCCGCTCGTAGGCCTCGATGTCCGACGTGACGATTCGCAGCAGAAAGTCCACGGCCCCCAGCTGCACATAACACTCCAGCACCTCAGGGAACCCGCGGATCGCCTCGGTGAACTCGGTAAAGTTGGAGCGCCCATGGGCGtt < 1:520749/150‑1 (MQ=255) aagaagaaCCGCTCGTAGGCCTCGATGTCCGACGTGACGATTCGCAGCAGAAAGTCCACGGCCCCCATCAGCACATAACACTCCAGCACCTCAGGGAACCCGCGGATCGCCTCGGTGAACTCGGTAAAGTTGGAGCGCCCATGGGCGTTc < 2:35573/150‑1 (MQ=255) ccgatctcTCGTAGGCCTCGATGTCCGACGTGACGATTCGCAGCAGAAAGTCCACGGCCCCCATCAGCACATAACACTCCAGCACCTCAGGGAACCCGCGGATCGCCTCGGTGAACTCGATAAAGTTGGAGCGCCCATGGGCGTTCAGtt < 2:156404/143‑1 (MQ=255) tCGTAGGCCTCGATGTCCGACGTGGCGATGTGCATCAGGAAGGCGACGGCCCCCATCACCACATAACACTCCAGCACCTCAGGGAACCCGCGGATCGCCTCGGTGAACTCGATAAAGTTGGAGCGCCCATGGGCGTTCAGtttagatcgg > 1:156404/1‑143 (MQ=255) gTAGGCCTCGATGTCCGACGTGACGATTCGCAGCAGAAAGTCCACGGCCCCCATCAGCACATAACACTCCAGCACCTCAGGGAACCCGCGGATCGCCTCGGTGAACTCGGTAAAGTTGGAGCGCCCATGGGCGTTCAGTTTCACTTCGGc < 2:453955/150‑1 (MQ=255) aTGTCCGACGTGACGATTCGCAGCAGAAAGTCCACGGCCCCCATCAGCACATAACACTCCAGCACCTCAGGGAACCCGCGGATCGCCTCGGTGAACTCGGTAAAGTTGGAGCGCCCATGGGCGTTCAGTTTCACTTCGGCGAAAATCTGc < 2:479849/150‑1 (MQ=255) aTGTCCGACGTGACGATTCGCAGCAGAAAGTCCACGGCCCCCATCAGCACATAACACTCCAGCACCTCAGGGAACCCGCGGATCGCCTCGGTGAACTCGGTAAAGTTGGAGCGCCCATGGGCGTTCAGTTTCACTTCGGCGAAAATCTGc < 2:211347/150‑1 (MQ=255) tCCGACGTGACGATTCGCAGCAGAAAGTCCACGGCCCCCATCAGCACATAACACTCCAGCACCTCAGGGAACCCGCGGATCGCCTCGGTGAACTCGGTAAAGTTGGAGCGccc < 1:226910/113‑1 (MQ=255) tCCGACGTGACGATTCGCAGCAGAAAGTCCACGGCCCCCATCAGCACATAACACTCCAGCACCTCAGGGAACCCGCGGATCGCCTCGGTGAACTCGGTAAAGTTGGAGCGccc > 2:226910/1‑113 (MQ=255) aGTCCACGGCCCCCATCAGCACATAACACTCCAGCACCTCAGGGAACCCGCGGATCGCCTCGGTGAACTCGGTAAAGTTGGAGCGCCCATGGGCGTTCAGTTTCACTTCGGCGAAAATCTGCGTGTTCAGGCCGACCTTCTTGCGGTCCa < 2:161976/150‑1 (MQ=255) ccATCAGCACATAACACTCCAGCACCTCAGGGAACCCGCGGATCGCCTCGGTGAACTCGGTAAAGTTGGAGCGCCCATGGGCGTTCAGTTTCACTTCGGCGAAAATCTGCGTGTTCAGGCCGACCTTCTTGCGGTCCAGCAAGGTCACCt > 1:382677/1‑150 (MQ=255) cATCAGCACATAACACTCCAGCACCTCAGGGAACCCGCGGATCGCCTCGGTGAACTCGATAAAGTTGGAGCGcc > 1:194108/1‑74 (MQ=255) cATCAGCACATAACACTCCAGCACCTCAGGGAACCCGCGGATCGCCTCGGTGAACTCGATAAAGTTGGAGCGcc < 2:194108/74‑1 (MQ=255) tCAGCACATAACACTCCAGCACCTCAGGGAACCCGCGGATCGCCTCGGTGAACTCGGTAAAGTTGGAGCGCCCATGGGCGTTCAGTTTCACTTCGGCGAAAATCTGCGTGTTCAGGCCGACCTTCTTGCGGTCCAGCAAGGTCACCTGcc > 2:62852/1‑150 (MQ=255) aGCACACAACACCCCATCACCTCAGGGAACCCGCGGATCGCCTCGGTGAACTCGGTAAAGTTGGCGCGCCCATGGGCGTTCAGTTTCACTTCGGCGAAAATCTGCGTGTTCAGGCCGACCTTCTTGCGGTCCAGCAAGGTCACCTGCCCa < 1:269518/150‑1 (MQ=255) aaCACTCCAGCACCTCAGGGAACCCGCGGATCGCCTCGGTGAACTCGGTAAAGTTGGAGCGCCCATGGGCGTTCAGTTTCACTTCGGCGAAAATCTGCGTGTTCAGGCCGACCTTCTTGCGGTCCAGCAAGGTCACCTGCCCACGAATCa > 1:417265/1‑150 (MQ=255) cGCCTCGGTGAACTCGGTAAAGTTGGAGCGCCCATGGGCGtt < 2:299775/42‑1 (MQ=255) cGCCTCGGTGAACTCGGTAAAGTTGGAGCGCCCATGGGCGtt > 1:299775/1‑42 (MQ=255) cTCGGTGAACTCGGTAAAGTTGGAGCGCCCATGGGCGTTCAGTTTCACTTCGGCGAAAATCTGCGTGTTCAGGCCGACCTTCTTGCGGTCCAGCAAGGTCACCTGCCCACGAATCACCCCCTCTTCCTTCAAGCGCTGAATGCGCCGCCa > 2:521697/1‑150 (MQ=255) ggTGAACTCGGTAAAGTTGGAGCGCCCATGGGCGTTCAGTTTCACTTCGGCGAAAATCTGCGTGTTCAGGCCGACCTTCTTGCGGTCCAGCAAGGTCACCTGCCCACGAATCACCCCCTCTTCCTTCAAGCGCTGAATGCGCCGCCAGCa > 2:433879/1‑150 (MQ=255) aaCTCGGTAAAGTTGGAGCGCCCATGGGCGTTCAGTTTCACTTCGGCGAAAATCTGCGTGTTCAGGCCGACCTTCTTGCGGTCCAGCAAGGTCACCTGCCCACGAATCACCCCCTCTTCCTTCAAGCGCTGAATGCGCCGCCAGCACGGc > 1:373307/1‑150 (MQ=255) cGGTAAAGTTGGAGCGCCCATGGGCGTTCAGTTTCACTTCGGCGAAAATCTGCGTGTTCAGGCCGACCTTCTTGCGGTCCAGCAAGGTCACCTGCCCACGAATCACCCCCTCTTCCTTCAAGCGCTGAATGCGCCGCCAGCACGGCGAtt < 2:417265/150‑1 (MQ=255) | CGGCACGTTCGACAGTTTTTCGAAGAAGAACCGCTCGTAGGCCTCGATGTCCGACGTGACGATTCGCAGCAGAAAGTCCACGGCCCCCATCAGCACATAACACTCCAGCACCTCAGGGAACCCGCGGATCGCCTCGGTGAACTCGGTAAAGTTGGAGCGCCCATGGGCGTTCAGTTTCACTTCGGCGAAAATCTGCGTGTTCAGGCCGACCTTCTTGCGGTCCAGCAAGGTCACCTGCCCACGAATCACCCCCTCTTCCTTCAAGCGCTGAATGCGCCGCCAGCACGGCGATT > NC_002947/5918536‑5918828 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |