| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 550,760 | G→A | 50.0% | G33S (GGT→AGT) | rpsJ → | 30S ribosomal protein S10 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 550,760 | 0 | G | A | 50.0% | ‑3.6 / 28.0 | 24 | G33S (GGT→AGT) | rpsJ | 30S ribosomal protein S10 |
| Reads supporting (aligned to +/- strand): ref base G (6/6); new base A (7/5); total (13/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGAAGGCTTTCGACCATCGCCTGATCGACCAATCCACCCAGGAAATCGTGGAAACCGCGAAACGTACTGGTGCACAAGTGCGTGGTCCAATTCCACTGCCTACCCGCAAAGAGCGTTTCACCGTTCTGGTCTCCCCGCACGTCAACAAAGACGCGCGTGACCAGTACGAGATTCGCACTCATAAGCGTGTTCTGGACATCGTCCAGCCAACGGA > NC_002947/550611‑550905 | cctTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGAAGGCTTTCGACCATCGCCTGATCGACCAATCCACCCAGGAAATCGTGGAAACCGCGAAACGTACTg < 2:414406/150‑1 (MQ=255) ggCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGAAGGCTTTCGACCATCGCCTGATCGACCAATCCACCCAGGAAATCGTGGAAACCGCGAAACGTACTGGTGCACAAgc < 2:387785/150‑2 (MQ=255) cGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGAAGGCTTTCGACCATCGCCTGATCGACCAATCCACCCAGGAAATCGTGGAAACCGCGAAACGTACTGGTGCACAAGTGc < 2:438967/150‑1 (MQ=255) gTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGAAGGCTTTCGACCATCGCCTGATCGACCAATCCACCCAGGAAATCGTGGAAACCGCGAAACGTACTAGTGCACAAGTGCGTgg > 2:22903/1‑150 (MQ=255) ggAACAGCCTGGAGTCTGAAATCCAAAATCGAATCAGCAAATCCGTATCAGGTTGAAGGCTTTCGACCATCGCCTGATCGACCAATCCACCCAGGAAATCGTGGAAACCGCGAAACGTACTGGTGCACAAGTGCGTGGTCCAATTCCACt > 1:385316/1‑150 (MQ=255) aaCAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGAAGGCTTTCGACCATCGCCTGATCGACCAATCCACCCAGGAAATCGTGGAAACCGCGAAACGTACTGGTGCACAAGTGCGTGGTCCAATTCCACTGc > 2:151109/1‑150 (MQ=255) ggAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGAAGGCTTTCGACCATCGCCTGATCGACCAATCCACCCAGGAAATCGTGGAAACCGCGAAACGTACTGGTGCACAAGTGCGTGGTCCAATTCCACTGCCTACCCGc < 2:18267/150‑1 (MQ=255) gTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGAAGGCTTTCGACCATCGCCTGATCGACCAATCCACCCAGGAAATCGTGGAAACCGCGAAACGTACTAGTGCACAAGTGCGTGGTCCAATTCCACTGCCTACCCGCaaa > 2:25618/1‑150 (MQ=255) aaTCCAATGCAAAATCAGCAAATCCGTATCAGGTTGAAGGCTTTCGACCATCGCCTGATCGACCAATCCACCCAGGAAATCGTGGAAACCGCGAAACGTACTAGTGCACAAGTGCGTGGTCCAATTCCACTGCCTACCCGCAAAGAGCGt < 1:203760/150‑1 (MQ=255) tCCAATGCAAAATCAGCAAATCCGTATCAGGTTGAAGGCTTTCGACCATCGCCTGATCGACCAATCCACCCAGGAAATCGTGGAAACCGCGAAACGTACTGGTGCACAAGTGCGTGGTCCAATTCCACTGCCTACCCGCAAAGAGCGttt > 1:491709/1‑150 (MQ=255) aaTCAGCAAATCCGTATCAGGTTGAAGGCTTTCGACCATCGCCTGATCGACCAATCCACCCAGGAAATCGTGGAAACCGCGAAACGTACTGGTGCACAAGTGCGTGGTCCAATTCCACTGCCTACCCGCAAAGAGCGTTTCACCGTTCTg < 2:491709/150‑1 (MQ=255) tCAGCAAATCCGTATCAGGTTGAAGGCTTTCGACCATCGCCTGATCGACGAATCCACCCAGGAAATCGTGGAAACCGCGAAACGTACTGGTGCACAAGTGCGTGGTCCAATTCCACTGCCTACCCGCAAAGAGCGTTTCACCGTTCTGGt < 2:385316/150‑1 (MQ=255) aggaagccGTATCAGGTTGAAGGCTTTCGACCATCGCCTGATCGACCAATCCACCCAGGAAATCGTGGAAACCGCGAAACGTACTAGTGCACAAGTGCGTGGACAAATTCCACTGCCTAACAGCAAAGGGCGTTTCACCGTTCTGGgctc > 1:443149/7‑150 (MQ=255) aGGCTTTCGACCATCGCCTGATCGACCAATCCACCCAGGAAATCGTGGAAACCGCGAAACGTACTAGTGCACAAGTGCGTGGTCCAATTCCACTGCCTACCCGCAAAGAGCGTTTCACCGTTCTGGTCTCCCCGCACGTCAACAAAGAcg > 1:535519/1‑150 (MQ=255) tttCGACCATCGCCTGATCGACCAATCCACCCAGGAAATCGTGGAAACCGCGAAACGTACTGGTGCACAAGTGCGTGGTCCAATTCCACTGCCTACCCGCAAAGAGCGTTTCACCGTTCTGGTCTCCCCGCACGTCAACAAAGAcgcgcg > 2:540220/1‑150 (MQ=255) gACCATCGCCTGATCGACCAATCCACCCAGGAAATCGTGGAAACCGCGAAACGTACTAGTGCACAAGTGCGTGGTCCAATTCCACTGCCTACCCGCAAACAGCGGTTCACCGTTCTGGTCTCCCCGCAc > 2:438525/1‑129 (MQ=255) gACCATCGCCTGATCGACCAATCCACCCAGGAAATCGTGGAAACCGCGAAACGTACTAGTGCACAAGTGCGTGGTCCAATTCCACTGCCTACCCGCAAACACCGGTTCACCGTTCTGGTCTCCCCGCAc < 1:438525/129‑1 (MQ=255) aCCAATCCACCCAGGAAATCGTGGAAACCGCGAAACGTACTGGTGCACAAGTGCGTGGTCCAATTCCACTGCCTACCCGCAAAGAGCGTTTCACCGTTCTGGTCTCCCCGCACGTCAACAAAGACGCGCGTGACCAGTACGAGATTCGCa > 1:264493/1‑150 (MQ=255) cACCCAGGAAATCGTGGAAACCGCGAAACGTACTAGTGCACAAGTGCGTGGTCCAATTCCACTGCCTACCCGCAAAGAGCGTTTCACCGTTCTGGTCTCCCCGCACGTCAACAAAGACGCGCGTGACCAGTACGAGATTCGCACTCATaa < 2:157475/150‑1 (MQ=255) aGGAAATCGTGGAAACCGCGAAACGTACTGGTGCACAAGTGCGTGGTCCAATTCCACTGCCTACCCGCAAAGAGCGTTTCACCGTTCTGGTCTCCCCGCACGTCAACAAAGACGCGCGTGACCAGTACGAGATTCGCACTCATAAGCgtg < 2:426648/150‑1 (MQ=255) aGGAAATCGTGGAAACCGCGAAACGTACTAGTGCACAAGTGCGTGGTCCAATTCCACTGCCTACCCGCAAAGAGCGTTTCACCGTTCTGGTCTCCCCGCACGTCAACAAAGACGCGCGTGACCAGTACGAGATTCGCACTCATAAGCgtg > 1:459136/1‑150 (MQ=255) gAAACCGCGAAACGTACTAGTGCACAAGTGCGTGGTCCAATTCCACTGCCTACCCGCAAAGAGCGTTTCACCGTTCTGGTCTCCCCGCACGTCAACAAAGACGCGCGTGACCAGTACGAGATTCGCACTCATAAGCGTGTTCTGGACATc < 1:22903/150‑1 (MQ=255) cgcgAAACGTACTAGTGCACAAGTGCGTGGTCCAATTCCACTGCCTACCCGCAAAGAGCGTTTCACCGTTCTGGTCTCCCCGCACGTCAACAAAGACGCGCGTGACCAGTACGAGATTCGCACTCATAAGCGTGTTCTGGACATCGTccc > 2:113734/1‑149 (MQ=255) aCGTACTAGTGCACAAGTGCGTGGTCCAATTCCACTGCCTACCCGCAAAGAGCGTTTCACCGTTCTGGTCTCCCCGCACGTCAACAAAGACGCGCGTGACCAGTACGAGATTCGCACTCATAAGCGTGTTCTGGACATCGTCCAGCCAAc < 1:25618/150‑1 (MQ=255) tACTGGTGCACAAGTGCGTGGTCCAATTCCACTGCCTACCCGCAAAGAGCGTTTCACCGTTCTGGTCTCCCCGCACGTCAACAAAGACGCGCGTGACCAGTACGAGATTCGCACTCATAAGCGTGTTCTGGACATCGTCCAGCCAACGGa > 2:67158/1‑150 (MQ=255) | CCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGAAGGCTTTCGACCATCGCCTGATCGACCAATCCACCCAGGAAATCGTGGAAACCGCGAAACGTACTGGTGCACAAGTGCGTGGTCCAATTCCACTGCCTACCCGCAAAGAGCGTTTCACCGTTCTGGTCTCCCCGCACGTCAACAAAGACGCGCGTGACCAGTACGAGATTCGCACTCATAAGCGTGTTCTGGACATCGTCCAGCCAACGGA > NC_002947/550611‑550905 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |