Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,089,817 | A→T | 10.3% | T225S (ACC→TCC) | fumC‑I → | class 2 fumarate hydratase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,089,817 | 0 | A | T | 10.3% | 105.6 / 4.8 | 39 | T225S (ACC→TCC) | fumC‑I | class 2 fumarate hydratase |
Reads supporting (aligned to +/- strand): ref base A (20/15); new base T (2/2); total (22/17) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.64e-01 |
GGTCGTACTCACCTGATGGACGCGATGCCCGTGCGCATGAGCCAGGTGCTGGATGGCTGGGCTGCGCAGATCAATGCTGCCAAGTCGCACATCGAAGGTGTGCTGCCGCACTTGCAGGCGCTGGCCCAGGGCGGAACCGCCGTGGGTACCGGCATCAACGCCCATC‑CGCAGTTCGCTGTCG‑GTTTCGCTCGCCAGCTCAGTGGCCTGACCAAGGTCGAGTTCACGCCCGGCCAGAACCTGTTCGCACTGATCGGCTCGCAGGACACTGCCGTGGCT > NC_002947/1089682‑1089957 | ggTCGTACTCACCTGATGGACGCGATGCCCGTGCGCATGAGCCAGGTGCTGGATGGCTGGGCTGCGCAGATCAATGCTGCCAAGTCGCACATCGAAGGTGTGCTGCCGCACTTGCAGGCGCTGGCCCAGGGCGGAACCGCCGTGGGTAcc < 1:145876/150‑1 (MQ=255) tCACCTGATGGACGCGATGCCCGTGCGCATGAGCCAGGTGCTGGATGGCTGGGCTGCGCAGATCAATGCTGCCAAGTCGCACATCGAAGGTGTGCTGCCGCACTTGCAGGCGCTGGCCCAGGGCGGAACCGCCGTGGGTACCGGCATCaa > 1:479079/1‑150 (MQ=255) tCACCTGATGGACGCGATGCCCGTGCGCATGAGCCAGGTGCTGGATGGCTGGGCTGCGCAGATCAATGCTGCCAAGTCGCACATCGAAGGTGTGCTGCCGCACTTGCAGGCGCTGGCCCACGGCGGTTCCGCCCTgggc > 2:539758/1‑138 (MQ=255) tCACCTGATGGACGCGATGCCCGTGCGCATGAGCCAGGTGCTGGATGGCTGGGCTGCGCAGATCAATGCTGCCAAGTCGCACATCGAAGGTGTGCTGCCGCACTTGCAGGCGCTGGCCCACGGCGGTTCCGCCCTgggc < 1:539758/139‑2 (MQ=255) ccTGATGGACGCGATGCCCGTGCGCATGAGCCAGGTGCTGGATGGCTGGGCTGCGCAGATCAATGCTGCCAAGTCGCACATCGAAGGTGTGCTGCCGCACTTGCAGGCGCTGGCCCAGGGCGGAACCGCCGTGGGTACCGGCATCAACGc > 2:26660/1‑150 (MQ=255) gACGCGATGCCCGTGCGCATGAGCCAGGTGCTGGATGGCTGGGCTGCGCAGATCAATGCTGCCAAGTCGCACATCGAAGGTGTGCTGCCGCACTTGCAGGCGCTGGCCCACGGCGGTTCCGCCCTgg < 2:232838/127‑1 (MQ=255) gACGCGATGCCCGTGCGCATGAGCCAGGTGCTGGATGGCTGGGCTGCGCAGATCAATGCTGCCAAGTCGCACATCGAAGGTGTGCTGCCGCACTTGCAGGCGCTGGCCCACGGCGGTTCCGCCCTgg > 1:232838/1‑127 (MQ=255) aCGCGATGCCCGTGCGCATGAGCCAGGTGCTGGATGGCTGGGCTGCGCAGATCAATGCTGCCAAGTCGCACATCGAAGGTGTGCTGCCGCACTTGCAGGCGCTGGCCCAGGGCGGAACCGCCGTGGGTACCGGCATCAACGCCCATC‑CGc < 2:561531/150‑1 (MQ=255) aTGCCCGTGCGCATGAGCCAGGTGCTGGATGGCTGGGCTGCGCAGATCAATGCTGCCAAGTCGCACATCGAAGGTGTGCTGCCGCACTTGCAGGCGCTGGCCCAGGGCGGAACCGCCGTGGGTACCGGCATCAACGCCCATC‑CGCAGTTc > 1:477864/1‑150 (MQ=255) cATGAGCCAGGTGCTGGATGGCTGGGCTGCGCAGATCAATGCTGCCAAGTCGCACATCGAAGGTGTGCTGCCGCACTTGCAGGCGCTGGCCCAGGGCGGAACCGCCGTGGGTACCGGCa > 1:324211/1‑119 (MQ=255) cATGAGCCAGGTGCTGGATGGCTGGGCTGCGCAGATCAATGCTGCCAAGTCGCACATCGAAGGTGTGCTGCCGCACTTGCAGGCGCTGGCCCAGGGCGGAACCGCCGTGGGTACCGGCa < 2:324211/119‑1 (MQ=255) aTGAGCCAGGTGCTGGATGGCTGGGCTGCGCAGATCAATGCTGCCAAGTCGCACATCGAAGGTGTGCTGCCGCACTTGCAGGCGCTGGCCCAGGGCGGAACCGCCGTGGGTACCGGCATCAACGCCCATC‑CGCAGTTCGCTGTc > 2:435662/1‑144 (MQ=255) aTGAGCCAGGTGCTGGATGGCTGGGCTGCGCAGATCAATGCTGCCAAGTCGCACATCGAAGGTGTGCTGCCGCACTTGCAGGCGCTGGCCCAGGGCGGAACCGCCGTGGGTACCGGCATCAACGCCCATC‑CGCAGTTCGCTGTc < 1:435662/144‑1 (MQ=255) gctgggctgCGCAGATCAATGCTGCCAAGTCGCACATCGAAGGTGTGCTGCCGCACTTGCAGGCGCTGGCCGAGGGCGGAACCGCCGTGGGTACCGGCATCAACGCCCCCA‑CGCGGTTCGCTGTCG‑GTTTCGCTCGCCAGCTCAGTGGcc > 1:148835/1‑150 (MQ=255) gctgggctgCGCAGATCAATGCTGCCAAGTCGCACATCGAAGGTGTGCTGCCGCACTTGCAGGCGCTGGCCCAGGGCGGAACCGCCGTGGGTACCGGCATCAACGCCACTC‑CGCAGTTCGCTGTCG‑GTTTCGCTCGCCAGCTCAGTgggc > 1:148822/1‑148 (MQ=255) gcgcAGATCAATGCTGCCAAGTCGCACATCGAAGGTGTGCTGCCGCCATCGCACGCGCTGGCCCAGGGCGGAACCGCCGTGGGTACCGGCATCAACGCCCATC‑CGCAGTTCGCTGTCG‑GTTTCGCTCGCCAGCTCAGTGGCCTGACCAAg > 2:221628/1‑150 (MQ=255) gcgcAGATCAATGCTGCCAAGTCGCACATCGAAGGTGTGCTGCCGCACTTGCAGGCGCTGGCCCAGGGCGGAACCGCCGTGGGTACCGGCATCAACGCCCATC‑CGCAGTTCGCTGTCG‑GTTTCGCTCGCCAGCTCAGTGGCCTGACCAAg < 1:142416/150‑1 (MQ=255) gATCAATGCCGCCAAGTCGCACATCGAAGGTGTGCCGCGGCACTTGCAGGCGCTGGCCCAGGGCGGAACCGCCGTGGGTACCGGCATCAACGCCCATC‑CGCAGTTCGCTGTCG‑GTTTCGCTCGCCAGCTCAGTGGCCTGACCAAGGTCGa < 2:497188/150‑1 (MQ=255) tCAATGCTGCCAAGTCGCACATCGAAGGTGTGCTGCCGCACTTGCAGGCGCTGGCCCAGGGCGGAACCGCCGTGGGTACCGGCATCAACGCCCATC‑CGCAGTTCGCTGTCG‑GTTTCGCTCGCCAGCTCAGTGGCCTGACCAAGGTCGAGt < 2:497564/150‑1 (MQ=255) aaTGCTGCCAAGTCGCACATCGAAGGTGTGCTGCCGCACTTGCAGGCGCTGGCCCAGGGCGGAACCGCCGTGGGTACCGGCATCAACGCCCATC‑CGCAGTTCGCTGTCG‑GTTTCGCTCGCCAGCTCAGTGGCCTGACCAAGGTCGAGTTc < 2:479079/150‑1 (MQ=255) tgctgcCAAGTCGCACATCGAAGGTGTGCTGCCGCACTTGCAGGCGCTGGCCCAGGGCGGAACCGCCGTGGGTACCGGCATCAACGCCCATC‑CGCAGTTCGCTGTCG‑GTTTCGCTCGCCAGCTCAGTTGCCTGACCAAGGTCGAGTTCAc > 2:415715/1‑150 (MQ=255) ccAAGTCGCACATCGAAGGTGTGCTGCCGCACTTGCAGGCGCTGGCCCAGGGCGGAACCGCCGTGGGTACCGGCATCAACGCCCATC‑CGCAGTTCGCTGTCG‑GTTTCGCTCGCCAGCTCAGTGGCCTGACCAAGGTCGAGTTCACGCCCg < 1:264738/150‑1 (MQ=255) ccAAGTCGCACATCGAAGGTGTGCTGCCGCACTTGCAGGCGCTGGCCCAGGGCGGAACCGCCGTGGGTACCGGCATCAACGCCCATC‑CGCAGTTCGCTGTCG‑GTTTCGCTCGCCAGCTCAGTGGCCTGACCAAGGTCGAGTTCACGCCCg < 2:477864/150‑1 (MQ=255) cAAGTCGCACATCGAAGGTGTGCTGCCGCACTTGCAGGCGCTGGCCCAGGGCGGAACCGCCGTGGGTAGCGGCATCAACGCCCATC‑CGCAGTTCGCTGTCG‑GTTTGGCGCGCCAGCTCAGTGGCCTGAGCAAGGTTGAGTTCACGCGCgg > 2:310591/1‑150 (MQ=255) gCACATCGAAGGTGTGCTGCCGCACTTGCAGGCGCTGGCCCAGGGCGGAACCGCCGTGGGTACCGGCATCAACGCCCATC‑CGCAGTTCGCTGTc < 2:108556/94‑1 (MQ=255) gCACATCGAAGGTGTGCTGCCGCACTTGCAGGCGCTGGCCCAGGGCGGAACCGCCGTGGGTACCGGCATCAACGCCCATC‑CGCAGTTCGCTGTc > 1:108556/1‑94 (MQ=255) acaTCGAAGGTGTGCTGCCGCACTTGCAGGCGCTGGCCCAGGGTGGAACCGCCGTGGGTACCGGCATCAACGCCCATC‑CGCAg > 2:229507/1‑83 (MQ=255) acaTCGAAGGTGTGCTGCCGCACTTGCAGGCGCTGGCCCAGGGTGGAACCGCCGTGGGTACCGGCATCAACGCCCATC‑CGCAg < 1:229507/83‑1 (MQ=255) aTCGAAGGTGTGCTGCCGCACTTGCCGCCGGTGGACCAAGGCGGAAGCGCCGGGGGTATAGGCATCAATGCCAATCGAGCA‑‑TCCAGGTCACACTGCGCTCGCCATCTCAGTGGCCTGACCAAGGTCGAGTTCGCGGCCGTCGATAACCTg > 1:270329/1‑150 (MQ=255) tCGAAGGTGTGCTGACGCACTTGCAAGCGCTGGCCCAGGGCGGAACCGCCGTGGCTACCGGCATCAACGCCCATC‑CGAAGTTCGATATCA‑GCTTGTCTTGCCAGGACAGTTGCGGGTCCAAGGGCGAGTTCACGCCCGTCCAGAACCTGt > 2:124572/1‑150 (MQ=255) cGAAGGTGTGCGGCCGCACTTGCAGGCGCTGGCCCAGGGCGGAACCGCCGTGGGTACCGGCATCAACGCCCATC‑CGCAGTTCGCTGTCG‑GTTTCGCTCGCCAGCTCAGTGGCCTGACCAAGGTCGAGTTCACGCCCGGCCAGAACCTGtt < 2:279115/150‑1 (MQ=255) aaGGTGTGCTGCCGCACTTGCAGGCGCTGGCCCAGGGCGGAACCGCCGTGGGTACCGGCATCAACGCCCAAC‑CGCAGTTCGCTGTCG‑GTTTCGCTCGCCAGCTCAGTGGCCTGACCAAGGTCGAGTTCACGCCCGGCCAGAACCTGTTCg > 1:322726/1‑150 (MQ=255) ccGCACTTGCAGGCGCTGGCCCAGGGCGGAACCGCCGTGGGTACCGGCATCAACGCCCATC‑CGCAGTTCGCTGTCG‑GTTTCGCTCGCCAGCTCAGTGGCCTGACCAAGGTCGAGTTCACGCCCGGCCAGAACCTGTTCGCACTGATCGGc > 1:423684/1‑150 (MQ=255) cACTTGCAGGCGCTGGCCCAGGGCGGAACCGCCGTGGGTACCGGCATCAACGCCCATC‑CGCAGTTCGCTGTCG‑GTTTCGCTCGCCAGCTCAGTGGCCTGACCAAGGTCGAGTTCACGCCCGGCCAGAACCTGTTCGCACTGATCGGCTCg > 1:293580/1‑150 (MQ=255) aGGCGCTGGCCCAGGGCGGAACCGCCGTGGGTACCGGCATCAACGCCCATC‑CGCAGTTCGCTGTCG‑GTTTCGCTCGCCAGCTCAGTGGCCTGACCAAGGTCGAGTTCACGCCCGGCCAGAACCTGTTCGCACTGATCGGCTCGCAGGaca > 1:190448/1‑150 (MQ=255) cccAGGGCGGAACCGCCGTGGGTACCGGCATCAACGCCCATC‑CGCAGTTCGCTGTCG‑GTTTCGCTCGCCAGCTCAGTGGCCTGACCAAGGTCGAGTTCACGCCCGGCCAGAACCTGTTCGCACTGATCGGCTCGCAGGACACTGCCGTgg < 1:92763/150‑1 (MQ=255) ccAGGGCGGAACCGCCGTGGGTACCGGCATCAACGCCCATC‑CGCAGTTCGCTGTCG‑GTTTCGCTCGCCAGCTCAGTGGCCTGACCAAGGTCGAGTTCACGCCCGGCCAGAACCTGTTCGCACTGATCGGCTCGCa > 2:120896/1‑135 (MQ=255) ccAGGGCGGAACCGCCGTGGGTACCGGCATCAACGCCCATC‑CGCAGTTCGCTGTCG‑GTTTCGCTCGCCAGCTCAGTGGCCTGACCAAGGTCGAGTTCACGCCCGGCCAGAACCTGTTCGCACTGATCGGCTCGCa < 1:120896/135‑1 (MQ=255) cAGGGCGGAACCGCCGTGGGTACCGGCATCAACGCCCATC‑CGCAGTTCGGTGTCG‑GTTTCGCTCGCCAGCTCAGTGGCCTGACCAAGGTCGAGTTCACGCCCGGCCAGAACCTGTTCGCACTGATCGGCTCGCAGGACACTGCCGTGGCt > 2:48079/1‑150 (MQ=255) | GGTCGTACTCACCTGATGGACGCGATGCCCGTGCGCATGAGCCAGGTGCTGGATGGCTGGGCTGCGCAGATCAATGCTGCCAAGTCGCACATCGAAGGTGTGCTGCCGCACTTGCAGGCGCTGGCCCAGGGCGGAACCGCCGTGGGTACCGGCATCAACGCCCATC‑CGCAGTTCGCTGTCG‑GTTTCGCTCGCCAGCTCAGTGGCCTGACCAAGGTCGAGTTCACGCCCGGCCAGAACCTGTTCGCACTGATCGGCTCGCAGGACACTGCCGTGGCT > NC_002947/1089682‑1089957 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |