Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,136,402 | C→A | 10.3% | L193F (TTG→TTT) | PP_0997 ← | sigma‑54 dependent transcriptional regulator/sensory box protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,136,402 | 0 | C | A | 10.3% | 102.2 / 3.8 | 39 | L193F (TTG→TTT) | PP_0997 | sigma‑54 dependent transcriptional regulator/sensory box protein |
Reads supporting (aligned to +/- strand): ref base C (16/19); new base A (2/2); total (18/21) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.30e-01 |
GCTGCTGACGGCATGGCAGGCGCGGGCTACCAGTTCTTTACCGGTGCCGGTCTCGCCATGCACCAGCAGCGGTGCATCGAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCATCGAAGCCTTCGGCGTGGTCGTGGTGCAGGGCCGACAGGCGTTCGCCCATACGCGAAGGTGGGTACAGCGTCAGCAGGCCACCGGCGTTGGTAATCGGCATGGCGTCCAGCAGCAGGCTATGGCCGTTCAGCTGCATTTCGCG > NC_002947/1136264‑1136551 | gctgctGACGGCATGGCAGGCGCGGGCTACCAGTTCTTTACCGGTGCCGGTCTCGCCATGCACCAGCAGCGGTGCATCGAGCGCAGCCACGGGTCAGTCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCATCGaa < 1:463888/150‑1 (MQ=255) tgctgACGGCATGGCAGGCGCGGGCTACCAGTTCTTTACCGGTGCCGGTCTCGCCATGCACCAGCAGCGGTGCATCGAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGAGTCGCCCAGCAAGGCATCGAAGc > 2:272477/1‑150 (MQ=255) ggCATGGCAGGCGCGGGCTAAGAGTTCTTTAACGGTGACGGTATCGCCATGCACCAGCAGCGGTGCAGAAAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGCGGGGATGGCAGGCTACTCCCCGAACAAGGCATCGAAGCCTGCGGc > 2:75524/1‑150 (MQ=255) aTGGCAGGCGCGGGCTACCAGTTCTTTACCGGTGCCGGTCTCGCCATGCACCAGCAGCGGTGCATCGAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCATCGAAGCCTTCGGcgtg > 2:101547/1‑150 (MQ=255) ggCGCGGGCTACCAGTTCTTTACCGGTGCCGGTCTCGCCATGCACCAGCAGCGGTGCATCGAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCATCGAAGCCTTCGGggtggtcgtg < 2:165564/150‑1 (MQ=255) gcgcGGGCTACCAGTTCTTTACCGGTGCCGGTCTCGCCATGCACCAGCAGCGGTGCATCGAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCATCGAAGCCTTCGGcgtggtcgtgg < 1:387245/150‑1 (MQ=255) aCCAGTTCTTTACCGGTGCCGGTCTCGCCATGCACCAGCAGCGGTGCATCGAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCATCGAAGCCTTCGGCGTGGTCGTGGTGCAGGGcc < 2:46500/150‑1 (MQ=255) cAGTTCTTTACCGGTGCCGGTCTCGCCATGCACCAGCAGCGGTGCATCGAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTGGCCCAGCAAGGCATCGAAGCCTTCGGCGTGGTCGTGGTGCAGGGCCGa > 2:379483/1‑150 (MQ=255) tCTTTACCGGTGCCGGTCTCGCCATGCACCAGCAGCGGTGCATCGAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCATCGAAGCCTTCGGCGTGGTCGTGGTGCAGGGCCGACAgg < 1:379483/150‑1 (MQ=255) tttACCGGTGCCGGTCTCGCCATGCCTTATGAGCGGTGCATCGAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCATCGAAGCCTTCGGCGTGGTCGTGGTGCAGGGCCGACAGGCg > 1:14640/1‑150 (MQ=255) cGGTGCCGGTCTCGCCATGCACCAGCAGCGGTGCATCGAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCATCGAAGCCTTCGGCGTGGTCGTGGTGCAGGGCAGACAGGCGTTCGc > 2:262522/1‑150 (MQ=255) ccGGTCTCGCCATGCACCAGCAGCGGTGCATCGAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCATCGAAGCCTTCGGCGTGGTCGTGGTGCAGGGCCGACAGGCGTTCGCCCATa < 1:110976/150‑1 (MQ=255) cGGTCTCGCCATGCACCAGCAGCGGTGCATCGAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCATCGAAGCCTTCGGCGTGGTCGTGGTGCAGGGCCGACAGGCGTTCGCCCATAc > 2:182280/1‑150 (MQ=255) tctcGCCATGCACCAGCAGCGGTGCATCGAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCATCGAAGCCTTCGGCGTGGTCGTGGTGCAGGGCCGACAGGCGTTCGCCCATAcgcg > 1:417415/1‑150 (MQ=255) tcGCCATGCACCAGCAGCGGTGCATCGAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCATCGAAGCCTTCGGCGTGGTCGTGGTGCAGGGCCGACAGGCGTTCGCCCATACGCGaa > 1:545020/1‑150 (MQ=255) aTGCACCAGCAGCGGTGCATCGAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCATCGAAGCCTTCGGCGTGGTCGTGGTGCAGGGCCGACAGGCGTTCGCCCATACGCGAAGGTgg < 1:455691/150‑1 (MQ=255) aTGCACCAGCAGCGGTGCATCGAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCATAGAAGCCTTCGGCGTGGTCGTGGTGCAGGGCCGACAGGCGTTCGCCCATACGCGAAGGTgg < 1:409309/150‑1 (MQ=255) cACCAGCAGCGGTGCATCGAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCATCGAAGCCTTCGGCGTGGTCGTGGTGCAGGGCCGACAGGCGTTCGCCCATACGCGAAGGTGGGTa < 2:73536/150‑1 (MQ=255) ccAGCAGCGGTGCATCGAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCATCGACGCCTTCGGCGTGGGCGTGGTGCAGGGCCGACAGGCGTTAGCCCATACGCGAAGGTGGGTACa > 1:124896/1‑150 (MQ=255) ccAGCAGCGGTGCATCGAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCATCGAAGCCTTCGGCGTGGTCGTGGTGCAGGGCCGACAGGCGTTCGCCCATACGCGAAGGTGGGTACa < 1:262522/150‑1 (MQ=255) ccAGCAGCGGTGCATCGAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCATCGAAGCCTTCGGCGTGGTCGTGGTGCAGGGCCGACAGGCGTTCGCCCATACGCGAAGGTGGGTACa < 2:118962/150‑1 (MQ=255) cATCGAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCATCGAAGCCTTCGGCGTGGTCGTGGTGCAGGGCCGACAGGCGTTCGCCCATACGCGAAGGTGGGTACAGCGTCAGCAGGc < 1:101547/150‑1 (MQ=255) tCGAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGAAAGGCATCGaa < 1:340502/74‑1 (MQ=255) tCGAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGAAAGGCATCGaa > 2:340502/1‑74 (MQ=255) tCGAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGAAAGGCATCGaa > 2:340501/1‑74 (MQ=255) tCGAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGAAAGGCATCGaa < 1:340501/74‑1 (MQ=255) cGAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCATCGAAGCCTTCGGCGTGGTCGTGGTGCAGGGCCGACAGGCGTTCGCCCATACGCGAAGGTGGGTACAGCGTCAGCAGGCCAc < 2:132639/150‑1 (MQ=255) accACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCATCGAAGCCTTCGGCGTGGTCGTGGTGCAGGGCCGACAGGCGTTCGCCCATACGCGAAGGTGGGTACAGCGTCAGCAGGCCACCGGCGTTg < 1:455530/149‑1 (MQ=255) cACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCATCGAAGCCTTCGGCGTGGTCGTGGTGCAGGGCCGACAGGCGTTCGCCCATACGCGAAGGTGGGTACAGCGTCAGCAGGCCACCGGCGTTGGt < 2:497240/150‑1 (MQ=255) gcgTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCATCGAAGCCTTCGGCGTGGTCGTGGTGCAGGGCCGACAGGCGTTCGCCCATACGCGAAg < 2:113556/113‑1 (MQ=255) gcgTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCATCGAAGCCTTCGGCGTGGTCGTGGTGCAGGGCCGACAGGCGTTCGCCCATACGCGAAg > 1:113556/1‑113 (MQ=255) tAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCATCGAAGCCTTCGGCGTGGTCGTGGTGCAGGGCCGACAGGCGTTCGCCCATACGCGAAGGTGGGTACAGCGTCAGCAGGCCACCGGc < 2:163594/138‑1 (MQ=255) tAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCATCGAAGCCTTCGGCGTGGTCGTGGTGCAGGGCCGACAGGCGTTCGCCCATACGCGAAGGTGGGTACAGCGTCAGCAGGCCACCGGc > 1:163594/1‑138 (MQ=255) ggCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCATCGAAGCCTTCGGCGTGGTCGTGGTGCAGGGCCGACAGGCGTTCGCCCATACGCGAAGGTGGGTACAGCGTCAGCAGGCCACCGGCGTTGGTAATCGGCAt > 1:365367/1‑150 (MQ=255) gCGACTCGCCCAGCAAGGCATCGAAGCCTTCGGCGTGGTCGTGGTGCAGGGCCGACAGGCGTTCGCCCATACGCGAAGGTGGGTACAGc > 2:418060/1‑89 (MQ=255) gCGACTCGCCCAGCAAGGCATCGAAGCCTTCGGCGTGGTCGTGGTGCAGGGCCGACAGGCGTTCGCCCATACGCGAAGGTGGGTACAGc < 1:418060/89‑1 (MQ=255) tCGCCCAGCAAGGCATCGAAGCCTTCGGCGTGGTCGTGGTGCAGGGCCGACAGGCGTTCGCCCATACGCGAAGGTGGGTACAGCGt < 1:212916/86‑1 (MQ=255) tCGCCCAGCAAGGCATCGAAGCCTTCGGCGTGGTCGTGGTGCAGGGCCGACAGGCGTTCGCCCATACGCGAAGGTGGGTACAGCGt > 2:212916/1‑86 (MQ=255) cccAGCAAGGCATCGAAGCCTTCGGCGTGGTCGTGGTGCAGGGCCGACAGGCGTTCGCCCATACGCGAAGGTGGGTACAGCGTCAGCAGGCCACCGGCGTTGGTAATCGGCATGGCGTCCAGCAGCAGGCTATGGCCGTTCAGCTGCAtt > 1:469711/1‑150 (MQ=255) cAAGGCATCGAAGCCTTCGGCGTGGTCGTGGTGCAGGGCCGACAGGCGTTCGCCCATACGCGAAGGTGGGTACAGCGTCAGCAGGCCACCGGCGTTGGTAATCGGCATGGCGTCCAGCAGCAGGCTATGGCCGTTCAGCTGCATTTcgcg < 1:182280/150‑1 (MQ=255) | GCTGCTGACGGCATGGCAGGCGCGGGCTACCAGTTCTTTACCGGTGCCGGTCTCGCCATGCACCAGCAGCGGTGCATCGAGCGCAGCCACGCGTAAGGCGCGGGCCTTGAGGGTGCGGATGGCCGGCGACTCGCCCAGCAAGGCATCGAAGCCTTCGGCGTGGTCGTGGTGCAGGGCCGACAGGCGTTCGCCCATACGCGAAGGTGGGTACAGCGTCAGCAGGCCACCGGCGTTGGTAATCGGCATGGCGTCCAGCAGCAGGCTATGGCCGTTCAGCTGCATTTCGCG > NC_002947/1136264‑1136551 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |