Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,174,539 | G→C | 11.8% | M137I (ATG→ATC) | PP_1029 → | membrane protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,174,539 | 0 | G | C | 11.8% | 91.4 / 6.2 | 34 | M137I (ATG→ATC) | PP_1029 | membrane protein |
Reads supporting (aligned to +/- strand): ref base G (14/16); new base C (2/2); total (16/18) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.56e-01 |
GTTGTACGTTGGGCGTGGTGTTCCTGCTGCAACTGAAGTCCGACCTGTTGCTGCTGTTGATGGGGGTATTCGTGACTGCCTATGCACTTTACGGGCTGGCAGTGAAAGTGAGGCCAGCGAGCCTGTCCGGCTTCTGGGCGGTGCCGATGGGCACGGCAGGCGGTTTGTTCGGGGCTTTGTTCGGCAGCGGCGGGTTTCTTTATGCCCTTTACCTGAGCGCACGGCTGGAGGTGAAGGAACAGGTACGCGCCACCCAGAGCGCGCTGATCAGCTGCAGTACGATAGTGCGTCTGTC > NC_002947/1174391‑1174685 | gTTGTACGTTGGGCGTGGTGTTCCTGCTGCAACTGAAGTCCGACCTGTTGCTGCTGTTGATGGGGGTATTCGTGACTGCCTATGCACTTTACGGGCTGGCAGTGAAAGTGGGGCCAGCGAGCCTGTCCGGCTTCTGGGCGGTGCCGATgg < 1:364211/150‑1 (MQ=255) ttGTACGTTGGGCGTGGTGTTCCTGCTGCAACTGAAGTCCGACCTGTTGCTGCTGTTGATGGGGGTATTCGTGACTGCCTATGCACTTTACGGGCTGGCAGTGAAAGTGAGGCCAGCGAGCCTGTCCGGCTTCTGGGCGGTGCCGATggg < 1:159997/150‑1 (MQ=255) gTTGGGCGTGGTGTTCCTGCTGCAACTGAAGTCCGACCTGTTGCGGCTGGTGATGGGGGTAGTCGTGACTGCCTATGCACTTTACGGGCTGGCAGTGAAAGTGAGGCCAGCGATCCTGTCCGGAGTCTGGGCGGTGCCGATGGGCACGGc > 1:144273/1‑150 (MQ=255) ggtgTTCCTGCTGCAACTGAAGTCCGACCTGTTGCTGCTGTTGATGGGGGTATTCGTGACTGCCTATGCACTTTACGGGCTGGCAGTGAAAGTGAGGCCAGCGAGCCTGTCCGGCTTCTGGGCGGTGCCGATGGGCACGGCAGGCGGttt < 2:100487/150‑1 (MQ=255) tgtTCCTGCTGCAACTGAAGTCCGACCTGTTGCTGCTGTTGATGGGGGTATTCGTGACTGCCTATGCACTTTACGGGCTGGCAGTGAAAGTGAGGCCAGCGAGCCTGTCCGGCTTCTGGGCGGTGCCGATGGGCACGGCAGGCGGTTTGt > 2:153266/1‑150 (MQ=255) cTGAAGTCCGACCTGTTGCTGCTGTTGATGGGGGTATTCGTGACTGCCTATGCACTTTACGGGCTGGCAGTGAAAGTGAGGCCAGCGAGCCTGTCCGGCTTCTGGGCGGTGCCGATGGGCACGGCAGGCGGTTTGTTCGGGGCTTTGTTc < 1:228220/150‑1 (MQ=255) gTTGCTGCTGTTGATGGGGGTATTCGTGACTGCCTATGCACTTTACGGGCTGGCAGTGAAAGTGAGGCCAGCGAGCCTGTCCGGCTTCTGGGCGGTGCCGATGGGCACGGCAGGCGGTTTGTTCGGGGCTTTGTTc < 1:180063/136‑1 (MQ=255) gTTGCTGCTGTTGATGGGGGTATTCGTGACTGCCTATGCACTTTACGGGCTGGCAGTGAAAGTGAGGCCAGCGAGCCTGTCCGGCTTCTGGGCGGTGCCGATGGGCACGGCAGGCGGTTTGTTCGGGGCTTTGTTc > 2:180063/1‑136 (MQ=255) gctgctGTTGATGGGGGTATTCGTGACTGCCTATGCACTTTACGGGCTGGCAGTGAAAGTGAGGCCAGCGAGCCTGTCCGGCTTCTGGGCGGTGCCGATGGGCACGGCAGGCGGTTTGTTGGGGGCTTTGTTCGGCAGCGGCGGGTTTCt > 2:445760/1‑150 (MQ=255) tGATGGGGGTATTCGTGACTGCCTATGCACTTTACGGGCTGGCAGTGAAAGTGAGGCCAGCGAGCCTGTCCGGCTTCTGGGCGGTGCCGATGGGCACGGCAGGCGGTTTGTTCGGGGCTTTGTTCGGCAGCGGCGGGTTTCTTTATGccc < 1:336748/150‑1 (MQ=255) ggTATTCGTGACTGCCTATGCACTTTACGGGCTGGCAGTGAAAGTGAGGCCAGCGAGCCTGTCCGTGTTCTGGGCGGTGCCGATGGGCACGGCAGGCGGTTTGTTCGGGGCTTTGTTCGGCAGCGGCGGGTTTCTTTATGCCCTTTACCt < 2:17034/150‑1 (MQ=255) ttCGTGACTGCCTATGCACTTTACGGGCTGGCAGTGAAAGTGAGGCCAGCGAGCCTGTCCGGCTTCTGGGCGGTGCCGATGGGCACGGCAGGCGGTTGGTTCGGGGCTTTGTTCGGCAGCGGCGGGTTTCTTTATGCCCTTTACCTGAgc > 1:408511/1‑150 (MQ=255) tCGTGACTGCCTATGCACTTTACGGGCTGGCAGTGAAAGTGAGGCCAGCGAGCCTGTCCGGCTTCTGGGCGGTGCCGATGGGCACGGCAGGCGGTTTGTTCGGGGCTTTGTTCGGCAGCGGCGGGTTTCTTTATGCCCtt < 2:40378/140‑1 (MQ=255) tCGTGACTGCCTATGCACTTTACGGGCTGGCAGTGAAAGTGAGGCCAGCGAGCCTGTCCGGCTTCTGGGCGGTGCCGATGGGCACGGCAGGCGGTTTGTTCGGGGCTTTGTTCGGCAGCGGCGGGTTTCTTTATGCCCtt > 1:40378/1‑140 (MQ=255) tGACTGCCTATGCACTTTACGGGCTGGCAGTGAAAGTGAGGCCAGCGAGCCTGTCCGGCTTCTGGGCGGTGCCGATGGGCACGGCAGGCGGTTTGTTCGGGGCTTTGTTCGGCAGCGGCGGGTTTCTTTATGCCCTTTACCTGAGCGCAc > 1:258125/1‑150 (MQ=255) gCCTATGCACTTTACGGGCTGGCAGTGAAAGTGAGGCCAGCGAGCCTGTCCGGCTTCTGGGCGGTGCCGATGGGCACGGCAGGCGGTTTGTTCGGGGCTTTGTTCGGCAGCGGCGGGTTTCTTTATGCCCTTTACCTGAGCGCACGGCTg < 2:352578/150‑1 (MQ=255) cTATGCACTTTACGGGCTGGCAGTGAAAGTGAGGCCAGCGAGCCTGTCCGGCTTCTGGGCGGTGCCGATGGGCACGGCAGGCGGTTTGTTCGGGGCTTTGTTCGGCAGCGGGGGGTTTCTTTATGCCCTTTACCTGAGCGCACGGCTggg > 1:279130/1‑149 (MQ=255) cTATGCACTTTACGGGCTGGCAGTGAAAGTGAGGCCAGCGAGCCTGTCCGGCTTCTGGGCGGTGCCGATGGGCACGGCAGGCGGTTTGTTCGGGGCTTTGTTCGGCAGCGGCGGGTTTCTTTATGCCCTTTACCTGAGCGCACGGCTGGa < 1:143119/150‑1 (MQ=255) gttgaCGGGCTGGCAGTAAAAGTGAGGCCAGCGAGCCTGTCCGGCTCCTGGGACGTGCCGATGGGGACGGTAGGCGGTTTGTTCGGGGCTTTGTTCGGCAGCGGCGGGTTTATTTATGCCCTTTACCTGAGCGCACGGCTGGAGGTGCAg < 2:144273/146‑1 (MQ=255) gCAGTGAAAGTGAGGCCAGCGAGCCTGTCCGGCTTCTGGGCGGTGCCGATGGGCACGGCAGGCGGTTTGTTCGGGGCTTTGTTCGGCAGCGGCGGGTTTCTTTATGCCCTTTACCTGAGCGCACGGCTGGAGGTGAAGGAACAGGTAc > 1:53696/1‑148 (MQ=255) gCAGTGAAAGTGAGGCCAGCGAGCCTGTCCGGCTTCTGGGCGGTGCCGATGGGCACGGCAGGCGGTTTGTTCGGGGCTTTGTTCGGCAGCGGCGGGTTTCTTTATGCCCTTTACCTGAGCGCACGGCTGGAGGTGAAGGAACAGGTAc < 2:53696/148‑1 (MQ=255) aaaGTGAGGCCAGCGAGCCTGTCCGGCTTCTGGGCGGTGCCGATGGGCACGGCAGGCGGTTTGTTCGGGGCTTTGTTCGGCAGCGGCGGGTTTCTTTATGCCCTTTACCTGAGCGCACGGCTGGAGGTGAAGGAACAGGTACGCGCCAcc > 1:358710/1‑150 (MQ=255) tGAGGCCAGCGAGCCTGTCCGGCTTCTGGGCGGTGCCGATGGGCACGGCAGGCGGTTTGTTCGGGGCTTTGTTCGGCAGCGGCGGGTTTCTTTATGCCCTTTACCTGAGCGCACGGCTGGAGGTGAAGGAACAGGTACGCGCCACCCaga < 2:258125/150‑1 (MQ=255) gCCAGCGAGCCTGTCCGGCTTCTGGGCGGTGCCGATGGGCACGGCAGGCGGTTTGTTCGGGGCTTTGTTCGGCAGCGGCGGGTTTCTTTATGCCCTTTACCTGAGCGCACGGCTGGAGGTGAAGGAACAGGTACGCGCCACCCAGAgcgc > 1:501057/1‑150 (MQ=255) gAGCCTGTCCGGCTTCTGGGCGGTGCCGATGGGCACGGCAGGCGGTTTGTTCGGGGCTTTGTTCGGCAGCGGCGGGTTTCTTTATGCCCTTTACCTGAGCGCACGGCTGGAGGTGAAGGAACAGGTACGCGCCACCCAGAGCGCGCTGAt < 2:501057/150‑1 (MQ=255) cGGCTTCTGGGCGGTGCCGATGGGCACGGCAGGCGGTTTGTTCGGGGCTTTGTTCGGCAGCGGCGGGTTTCTTTATGCCCTTTACCTGAGCGCACGGCTGGAGGTGAAGGAACAGGTACGCGCCACCCAGAgcgcgc < 1:45180/137‑1 (MQ=255) cGGCTTCTGGGCGGTGCCGATGGGCACGGCAGGCGGTTTGTTCGGGGCTTTGTTCGGCAGCGGCGGGTTTCTTTATGCCCTTTACCTGAGCGCACGGCTGGAGGTGAAGGAACAGGTACGCGCCACCCAGAgcgcgc > 2:45180/1‑137 (MQ=255) ggCTTCTGGGCGGTGCCGATGGGCACGGCAGGCGGTTTGTTCGGGGCTTTGTTCGGCAGCGGCGGGTTTCTTTATGCCCTTTACCTGAGCGCACGGCTGGAGGTGAAGGAACAGGTACGCGCCACCCAGAGCGCGCTGATCAGCTGCAGt < 1:491228/150‑1 (MQ=255) gCTTCTGGGCGGTGCCGATGGGCACGGCAGGCGGTTTGTTCGGGGCTTTGTTCGGCAGCGGCGGGTTTCTTTATGCCCTTTACCTGAGCGCACGGCTGGAGGTGAAGGAACAGGTACGCGCCACCCAGAGCGCGCTGATCAGCTGCAGTa < 1:153266/150‑1 (MQ=255) ggCGGTGCCGATGGGCACGGCAGGCGGTTTGTTCGGGGCTTTGTTCGGCAGCGGCGGGTTTCTTTATGCCCTTTACCTGAGCGCACGGCTGGAGGTGAAGGAACAg < 1:493998/106‑1 (MQ=255) ggCGGTGCCGATGGGCACGGCAGGCGGTTTGTTCGGGGCTTTGTTCGGCAGCGGCGGGTTTCTTTATGCCCTTTACCTGAGCGCACGGCTGGAGGTGAAGGAACAg > 2:493998/1‑106 (MQ=255) gccgTGCCCATCGGCACGGCAGGCGGTTTGTTCGGGGCTTTGTTCGGCAGCGGCGGGTTTCTTTATGCCCTTTACCTGAGCGCACGGCTGGAGGTGAAGGAACAGGTACGCGCCACCCAGAGCGCGCTGATCAGc < 1:559609/132‑1 (MQ=255) gccgTGCCCATCGGCACGGCAGGCGGTTTGTTCGGGGCTTTGTTCGGCAGCGGCGGGTTTCTTTATGCCCTTTACCTGAGCGCACGGCTGGAGGTGAAGGAACAGGTACGCGCCACCCAGAGCGCGCTGATCAGc > 2:559609/4‑135 (MQ=255) cgTGCCCATCGGCACGGCAGGTGGTTTGTTCGGGGCTTTGTTCGGCAGCGGCGGGTTTCTTTATGCCCTTTACCTGAGCGCACGGCTGGAGGTGAAGGAAc > 2:331999/2‑101 (MQ=255) cgTGCCCATCGGCACGGCAGGTGGTTTGTTCGGGGCTTTGTTCGGCAGCGGCGGGTTTCTTTATGCCCTTTACCTGAGCGCACGGCTGGAGGTGAAGGAAc < 1:331999/100‑1 (MQ=255) gATGGGCACGGCAGGCGGTTTGTTCGGGGCTTTGTTCGGCAGCGGCGGGGTTCTTTATGCCCTTTACCTGAGAGCACGGCTGGAGGTGAAGGAACAGGTACGCGACACCCAGAGCGCGCTGATCAGATGCATTACGATAGTGCGTCTGTc > 1:262631/1‑150 (MQ=255) | GTTGTACGTTGGGCGTGGTGTTCCTGCTGCAACTGAAGTCCGACCTGTTGCTGCTGTTGATGGGGGTATTCGTGACTGCCTATGCACTTTACGGGCTGGCAGTGAAAGTGAGGCCAGCGAGCCTGTCCGGCTTCTGGGCGGTGCCGATGGGCACGGCAGGCGGTTTGTTCGGGGCTTTGTTCGGCAGCGGCGGGTTTCTTTATGCCCTTTACCTGAGCGCACGGCTGGAGGTGAAGGAACAGGTACGCGCCACCCAGAGCGCGCTGATCAGCTGCAGTACGATAGTGCGTCTGTC > NC_002947/1174391‑1174685 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |