| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,283,291 | C→T | 25.2% | C326Y (TGC→TAC) | PP_2885 ← | transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,283,291 | 0 | C | T | 25.2% | 15.3 / 5.0 | 16 | C326Y (TGC→TAC) | PP_2885 | transporter |
| Reads supporting (aligned to +/- strand): ref base C (5/7); new base T (2/2); total (7/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.53e-01 | |||||||||||
GCCCGATCACCGCGCCCATGCCTTGGGCGGCGCCAATGGAACCGGCCGTGGCGCCTTGTTCGGAGGCCTGCATGGCATTGGCCGCCAGTGCCGAAAACGCCGGGAACACGAAGCCCATGCCGGCCGCCGCAACAAAATAGCAAGCCCACAGCCACGGCGCCGTGGTGGCCAGCGAGCCACAGGCAAAGCCCAGTGCCGATACCGTGGCACCCACCCGGATCATCTTCAGCGGTGGCCACTCCAGTTGGCGCAGTATCACCTGGGCCAGCATCAGTGC > NC_002947/3283151‑3283427 | gCCCGATCACCGCGCCCATGCCTTGGGCGGCGCCAATGGAACCGGCCGTGGCGCCTTGTTCGGAGGCCTGCATGGCATTGGCCGCCAGTGCCGAAAACGCCGGGAACACGAAGCCCATGCCGGCCGCCGCAACAAAATAGTAAGCCcaca > 1:285387/1‑150 (MQ=255)gCCCGATCACCGCGCCCATGCCTTGGGCGGCGCCAATGGAACCGGCCGTGGCGCCTTGTTCGGAGGCCTGCATGGCATTGGCCGCCAGTGCCGAAAACGCCGGGAACACGAAGCCCATGCCGGCCGCCGCAACAAAATAGTAAGCCcaca > 1:285419/1‑150 (MQ=255) ccATGCCTTGGGCGGCGCCAATGGAACCGGCCGTGGCGCCTTGTTCGGAGGCCTGCATGGCCTTCGCCGCCAATCCCGCAAACGCCGCGCTGACTAAGCCCATGCCGGCCGCCGCAACAAAATAGCAAGCCCACAGCCACGGCGCCgtgg < 1:492864/150‑1 (MQ=255) aTGCCTTGGGCGGCGCCAATGGAACCGGCCGTGGCGCCTTGTTCGGAGGCCTGCATGGCATTGGCCGCCAGTGCCGAAAACGCCGGGAACACGAAGCCCATGCCGGCCGCCGCAACAAAATAGCAAGCCCACAGCCACGGCGCCgtggtg > 2:3558/1‑150 (MQ=255) aTGCCTGGGGCGGCGCCAATGGAACCGGCCTTGGCTCCTTGTTCGGAGGCCAGCATGGCATTGGCCGCCAGTGCCATAAACTTCGTTAACACGAAGCCCATGCCGGCCGCCGCAACAAAATAGCAAGCCCACAGCCACGGCGCCgtggtg < 2:250198/150‑1 (MQ=255) cTTGGGCGGCGCCAATGGAACCGGCCGTGGCGCCTTGTTCGGAGGCCTGCATGGCATTGGCCGCCAGTGCCGAAAACGCCGGGAACACGAAGCCCATGCCGGCCGCCGCCAAAAAATAGCAAGCCCACAGCCACGGCGCCGTGGTGGCCa > 1:149008/1‑150 (MQ=255) cAATGGAACCGGCCGTGGCGCCTTGTTCGGAGGCCTGCATGGCATTGGCCGCCAGTGCCGAAAACGCCGGGAACACGAAGCCCATGCCGGCCGCCGCAACAAAATAGCAAGCCCACAGCCACGGCGCCGTGGTGGCCAGCGAGCCCCAgg > 2:48752/1‑150 (MQ=255) aaCCGGCCGTGGCGCCTTGTTCGGAGGCCTGCATGGCATCTTCCGCCAGTGCCGAAAACGCCGGGAACACGAAGCCCATGCCGGCCGCCGCAACAAAATAGCAAGCCCACAGCCACGGCGCCGTGGTGGCCAGCGAGCCACAGGCAAAGc < 1:148738/150‑1 (MQ=255) ttGTTCGGAGGCCTGCATGGCATTGGCCGCCAGTGCCGAAAACGCCGGGAACACGAAGCCCATGCCGGCCGCCGCAACAAAATAGCAAGCCCACAGCCACGGCGCCGTGGTGGCCAGCGAGCCACAGGCAAAGCCCAGTGCCGATACCGt < 2:270473/150‑1 (MQ=255) gTTCGGGGGCCTGCATGGCATTGGCCGCCAGTGCCGAAAACGCCGGGAACACGAAGCCCATGCCGGCCGCCGCAACAAAATAGCAAGCCCACAGCCACGGCGCCGTGGTGGCCAGCGAGCCACAGGCAAAGCCCAGTGCCGATACCGTgg < 2:521253/150‑1 (MQ=255) gccgccAGTGCCGAAAACGCCGGGAACACGAAGCCCATGCCGGCCGCCGCAACAAAATAGCAAGCCCACAGCCACGGCGCCGTGGTGGCCAGCGAGCCACAGGCAAAGCCCAGTGCCGATACCGTGGCACCCACCCGGATCATCGTCatc > 2:409259/1‑148 (MQ=255) gtcaaCACTAAGCCCATGCCGTCCGCCGCAACAAAATAGCAAGCCCACATCCACGGCGCCGTGGTGGCCAGCGAGCCACAGGCAAAGCCCAGTGCCGATACCGTGGCACCCACCCGGATCATCTTCAGCGGTGGCCACTCCAGTTGgcgc < 1:115889/147‑1 (MQ=255) aGCCCATGCCGGCCGCCGCAACAAAATAGCAAGCCCACAGCCACGGCGCCGTGGTGGCCAGCGAGCCACAGGCAAAGCCCAGTGCCGATACCGTGGCACCCACCCGGATCATCTTCAGCGGTGGCCACTCCAGTTGGCGCAGTATCACCt > 1:15962/1‑150 (MQ=255) cccATGCCGGCCGCCGCAACAAAATAGTAAGCCCACAGCCACGGCGCCGTGGTGGCCAGCGAGCCATAGGCAAAGCCCAGTGCCGATACCGTGGCACCCACCCGGATCATCTTCAGCGGTGGCCACTCCAGTTGGCGCAGTATCACCTgg < 2:285387/150‑1 (MQ=255) cccATGCCGGCCGCCGCAACAAAATAGTAAGCCCACAGCCACGGCGCCGTGGTGGCCAGCGAGCCATAGGCAAAGCCCAGTGCCGATACCGTGGCACCCACCCGGATCATCTTCAGCGGTGGCCACTCCAGTTGGCGCAGTATCACCTgg < 2:285419/150‑1 (MQ=255) cgcAACAAAATAGCAAGCCCACAGCCACGGCGCCGTGGTGGCCAGCGAGCCACAGGCAAAGCCCAGTGCCGATACCGTGGCACCCACCCGGATCATCTTCAGCGGTGGCCACTCCAGTTGGCGCAGTATCACCTGGGCCAGCATCAGTGc < 1:146695/150‑1 (MQ=255) | GCCCGATCACCGCGCCCATGCCTTGGGCGGCGCCAATGGAACCGGCCGTGGCGCCTTGTTCGGAGGCCTGCATGGCATTGGCCGCCAGTGCCGAAAACGCCGGGAACACGAAGCCCATGCCGGCCGCCGCAACAAAATAGCAAGCCCACAGCCACGGCGCCGTGGTGGCCAGCGAGCCACAGGCAAAGCCCAGTGCCGATACCGTGGCACCCACCCGGATCATCTTCAGCGGTGGCCACTCCAGTTGGCGCAGTATCACCTGGGCCAGCATCAGTGC > NC_002947/3283151‑3283427 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |