New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5477178	12 (0.290)	8 (0.280)	7/182	2.7	40.8%	intergenic (+43/+69)	PP_4813/PP_4814	PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein
	?	NC_002947	= 5477195	15 (0.520)					intergenic (+60/+52)	PP_4813/PP_4814	PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein

TGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTC  >  NC_002947/5477046‑5477342                                                                                                                                                      |                                                                                                                                                    tggtggCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTAt                                                                                                                                                     >  1:957414/1‑150 (MQ=255)  ggtggCTGGTGTTGCCTGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATc                                                                                                                                                    >  2:819723‑M2/1‑149 (MQ=255)   gtggCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcg                                                                                                                                                   <  2:997194‑M2/150‑3 (MQ=255)     ggCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgta                                                                                                                                                 >  1:264961‑M2/1‑146 (MQ=255)     ggCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgta                                                                                                                                                 >  2:525048‑M2/1‑146 (MQ=255)     ggCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgta                                                                                                                                                 >  1:997194‑M2/1‑146 (MQ=255)        tGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtagga                                                                                                                                              >  2:877971‑M2/1‑143 (MQ=255)                ccGGCATAGATGGCGCGGCTGACGTTCTTCGCCATGCATGCGTTGCCGCAGGATTTGGTCAGGTATAAATATTGCTGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACTGGGTCGCGCTTATcgtaggagcgggttt                                                                                                                                      >  2:169959‑M2/1‑135 (MQ=255)                  ggCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttac                                                                                                                                    >  2:957414‑M2/1‑133 (MQ=255)                  ggCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttac                                                                                                                                    >  1:303909‑M2/1‑133 (MQ=255)                   gCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacc                                                                                                                                   <  2:82494‑M2/150‑19 (MQ=255)                      tGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggttttcccgc                                                                                                                                >  2:218778‑M2/1‑129 (MQ=255)                      tGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgc                                                                                                                                >  2:554704‑M2/1‑129 (MQ=255)                         gTGGCGCTGCTGGCGTTCTTCGCCATGCATGCTTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgcgaa                                                                                                                             >  1:905701‑M2/1‑126 (MQ=255)                         gTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgcgaa                                                                                                                             >  2:166070‑M2/1‑126 (MQ=255)                              gctgctGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggc                                                                                                                        >  1:82494‑M2/1‑121 (MQ=255)                                                      tgcGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacc                                                                                                                                   >  1:805210‑M2/1‑97 (MQ=255)                                                      tgcGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacc                                                                                                                                   <  2:805210‑M2/115‑19 (MQ=255)                                                                              gTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacc                                                                                                                                   <  2:561170‑M2/91‑19 (MQ=255)                                                                              gTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacc                                                                                                                                   >  1:561170‑M2/1‑73 (MQ=255)                                                                                 tCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgcgaata                                                                                                                           >  2:997118‑M2/1‑70 (MQ=255)                                                                                 tCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgcgaata                                                                                                                           <  1:997118‑M2/96‑27 (MQ=255)                                                                                                     gCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacaggca                                                                                                             >  1:250294‑M2/1‑50 (MQ=255)                                                                                                     gCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacaggca                                                                                                             <  2:250294‑M2/90‑41 (MQ=255)                                                                                                      ccGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGc                                                >  2:166040/1‑150 (MQ=255)                                                                                                        ggCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGccc                                              >  2:798771/1‑150 (MQ=255)                                                                                                            tATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatgg                                                              >  1:350041‑M2/1‑43 (MQ=255)                                                                                                            tATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatgg                                                              <  2:350041‑M2/130‑88 (MQ=255)                                                                                                            tATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCACCCAGcc                                          >  1:801909/1‑150 (MQ=255)                                                                                                                 gcgGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCgc                                        <  2:900462/147‑1 (MQ=255)                                                                                                                 gcgGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCgc                                        >  1:900462/1‑147 (MQ=255)                                                                                                                         aCCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGa                             >  1:306681/1‑150 (MQ=255)                                                                                                                          cccGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctg                                                                               <  2:403033‑M2/99‑71 (MQ=255)                                                                                                                          cccGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctg                                                                               >  1:403033‑M2/1‑29 (MQ=255)                                                                                                                          cccGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATc                                                                                                <  2:202112/82‑1 (MQ=255)                                                                                                                          cccGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATc                                                                                                >  1:202112/1‑82 (MQ=255)                                                                                                                           ccGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatggcgaagaacgccagcagcgccacgcatgccggcaac                           <  2:394060‑M2/150‑123 (MQ=255)                                                                                                                           ccGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatggcgaagaacgccagcagcgccacgcatgccggcaac                           <  2:848968‑M2/150‑123 (MQ=255)                                                                                                                           ccGCTCCTACGCACGGGATCGCGCTTATCGTAGAAGCGGGAATACCCACGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAAt                           >  1:245752/1‑150 (MQ=255)                                                                                                                             gCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatggcgaagaac                                                      >  2:251205‑M2/1‑26 (MQ=255)                                                                                                                             gCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatggcgaagaac                                                      <  1:251205‑M2/121‑96 (MQ=255)                                                                                                                                 cTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAggg                     >  2:604395/1‑150 (MQ=255)                                                                                                                                  tACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGGt                    <  1:166040/150‑1 (MQ=255)                                                                                                                                            aTCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTcc          >  1:635803/1‑150 (MQ=255)                                                                                                                                                    tATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGc                                                                      <  2:574598/82‑1 (MQ=255)                                                                                                                                                    tATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGc                                                                      >  1:574598/1‑82 (MQ=255)                                                                                                                                                    tATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTc  <  1:798771/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                    TGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTC  >  NC_002947/5477046‑5477342

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.