New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5882742 = | 53 (1.270) | 14 (0.370) | 10/238 | 2.8 | 25.5% | intergenic (+17/+31) | serA/PP_5156 | bifunctional D‑3‑phosphoglycerate dehydrogenase/alpha‑ketoglutarate reductase/hypothetical protein |
? | NC_002947 | 5882773 = | 34 (0.900) | coding (477/477 nt) | PP_5156 | hypothetical protein |
TACGTGGTAATCGATGTTGACGCCGAGTACTCGGACCTGGCGCAGGAAAAACTGCAACAGGTCAAAGGCACCATCCGTTCGCGCGTCCTGTTCTAAGGTCGCTGGCGGTATGAAAAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTGGTCACCCAGAATCAGTTGCAGGGTGTGCTTGCCCGGGGTCAGGGTAATGCTGGTTTCGGTCTGTGCCTTGCCGAAGTGCAG > NC_002947/5882630‑5882916 | tACGTGGTAATCGATGTTGACGCCGAGTACTCGGACCTGGCGCAGGAAAAACTGCAACAGGTCAAAGGCACCATCCGTTCGCGCGTCCTGTTCTAAGGTCGCTGGCGGTATGAAAAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTAtctc < 1:1053178/150‑1 (MQ=255) gTGGTAATCGATGTTGACGCCGAGTACTCGGACCTGGCGCAGGAAAAACTGCAACAGGTCAAAGGCACCATCCGTTCGCGCGTCCTGTTCTAAGGTCGCTGGCGGTATGAAAAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACt > 2:952075/1‑150 (MQ=255) gTAATCGATGTTGACGCCGAGTACTCGGACCTGGCGCAGGAAAAACTGCAACAGGTCAAAGGCACCATCCGTTCGCGCGTCCTGTTCTAAGGTCGCTGGCGGTATGAAAAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCa > 1:403418/1‑150 (MQ=255) aaTCGATGTTGACGCCGAGTACTCGGACCTGGCGCAGGAAAAACTGCAACAGGTCAAAGGCACCATCCGTTCGCGCGTCCTGTTCTAAGGTCGCTGGCGGTATGAAAAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAAc < 2:316000/150‑1 (MQ=255) aTCGATGTTGACGCCGAGTACTCGGACCTGGCGCAGGAAAAACTGCAACAGGTCAAAGGCACCATCCGTTCGCGCGTCCTGTTCTAAGGTCGCTGGCGGTATGAAAAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAAcc > 2:547310/1‑150 (MQ=255) aTCGATGTTGACGCCGAGTACTCGGACCTGGCGCACGAAAAACTGCAACAGGTCAAAGGCACCATCCGTTCGCGCGTCCTGTTCTAAGGTCGCTGGCGGTATGAAGAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTCTATTTCACTTCAAcc < 2:19234/150‑1 (MQ=255) ccccgggcaagcacaccctgcaactgattctgggtgaccagtatcatgtgccattcaagcctagcgtcgagtagaagaagatcaaggttgaagtgaaaaaaaaaaaggaaggccctggtggcctccctttttTTATTTCACTTCaacctt > 2:1008834‑M2/133‑148 (MQ=255) cGCCGAGTACTCGGACCTGGCGCAGGAAAAACTGCAACAGGTCAAAGGCACCATCCGTTCGCGCGTCCTGTTCTAAGGTCGCTGGCGGTATGAAAAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAACCGTGATcttctt < 1:402680/150‑1 (MQ=255) cGAGTACTCGGACCTGGCGCAGGAAAAACTGCAACAGGTCAAAGGCACCATCCGTTCGCGCGTCCTGTTCTAAGGTCGCTGGCGGTATGAAAAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAACCGTGATCTTCTtcga > 1:788981/1‑150 (MQ=255) acacccttcaactgattctgggtgaccattatcatgtgccattcaagcctagcctcgagtcgaagaagatcacggttgaagtgaaataaaaaaagggaggccctggtgggctccctttttTTATTTCACTTCAACCGTGATCTTCTtcga < 1:1008834‑M2/30‑1 (MQ=255) tACTCGGGCCTGGCGCAGGAAAAACTGCAACAGGTCAAAGGCACCATCCGTTCGCGCGTCCTGTTCTAAGGTCGCTGGCGGTATGAAAAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAACCGTGATCTTCTtcgactcg > 1:200093/1‑150 (MQ=255) aCTCGGACCTGGCGCAGGAAAAACTGCAACAGGTCAAAGGCACCATCCGTTCGCGCGTCCTGTTCTAAGGTCGCTGGCGGTATGAAAAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAACCGTGATCTTCTtcgactcga < 1:952075/150‑1 (MQ=255) gAAAAACTGCAACAGGTCAAAGGCACCATCCGTTCGCGCGTCCTGTTCTAAGGTCGCTGGCGGTATGAAAAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAACCGTGAtc > 1:424540/1‑120 (MQ=255) gAAAAACTGCAACAGGTCAAAGGCACCATCCGTTCGCGCGTCCTGTTCTAAGGTCGCTGGCGGTATGAAAAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAACCGTGAtc < 2:424540/120‑1 (MQ=255) gAAAAACTGCAACAGGTCAAAGGCACCATCCGTTCGCGCGTCCTGTTCTAAGGTCGCTGGCGGTATGAAAAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGc > 1:736939/1‑150 (MQ=255) cagtatcatgtgccattcaagcctagcgtcgagtcgaagaagatcacggttgaagtgaaataaaaaaagggaggccctggtggcctccctttttTTa < 2:976538‑M2/3‑1 (MQ=255) cagtatcatgtgccattcaagcctagcgtcgagtcgaagaagatcacggttgaagtgaaataaaaaaagggaggccctggtggcctccctttttTTa > 1:976538‑M2/95‑97 (MQ=255) aaCAGGTCAAAGGCACCATCCGTTCGCGCGTCCTGTTCTAAGGTCGCTGGCGGTATGAAAAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACt > 1:139503/1‑150 (MQ=255) aCAGGTCAAAGGCACCATCCGTTCGCGCGTCCTGTTCTAAGGTCGCTGGCGGTATGAAAAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTg < 2:403418/150‑1 (MQ=255) aCAGGTCAAAGGCACCATCCGTTCGCGCGTCCTGTTCTAAGGTCGCTGGCGGTATGAAAAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTg < 1:547310/150‑1 (MQ=255) cAAAGGCACCATCCGTTCGCGCGGCCTGTTCTAAGGTCGCTGGCGGTATGAAAAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTGGTCAcc < 2:275758/150‑1 (MQ=255) cATCCGTTCGCGCGTCCTGTTCTAAGGTCGCTGGCGGTATGGAAAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAACCGt > 1:76966/1‑90 (MQ=255) cATCCGTTCGCGCGTCCTGTTCTAAGGTCGCTGGCGGTATGGAAAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAACCGt < 2:76966/90‑1 (MQ=255) cATCCGTTCGCGCGTCCTGTTCTAAGGTCGCTGGCGGTATGAAAAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTGGTCACCCAGAATCAg < 2:200093/150‑1 (MQ=255) gcgcgTCCTGTTCTAAGGTCGCTGGCGGTATGAAAAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTGGTCACCAAGAATCTGttagtgctg < 2:788981/150‑8 (MQ=255) tcgaagaagatcacggttgaagtgaaataaAAAAAGGGAGCCCACCAG‑GGCCTCCCTTTTTTTATTTCACTTCAACCGTGATCTTCTTCGACTCGAGGCTAGGCTTGAATGGCACATGATAATGGTCACCCAGAATCAGTTGAAGGgtgt < 1:1008834‑M1/120‑1 (MQ=255) gcgTCCTGTTCTAAGGTCGCTGGCGGTATGAAAAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTa > 2:887495/1‑101 (MQ=255) gcgTCCTGTTCTAAGGTCGCTGGCGGTATGAAAAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTa < 1:887495/101‑1 (MQ=255) gcgTCCTGTTCTAAGGTCGCTGGCGGTATGAAAAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTg < 1:666225/124‑1 (MQ=255) gcgTCCTGTTCTAAGGTCGCTGGCGGTATGAAAAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTg > 2:666225/1‑124 (MQ=255) tGTTCTAAGGTCGCTGGCGGTATGAAAAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTGGTCACCCAGAATCAGTTGCAGGGTGTGCTTGc > 2:352155/1‑150 (MQ=255) ttgtAAGGTCGCTGGCGGTATGAAAAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTGGTCACCCAGAATCAGTTGCAGGGTGTGCTTGccc > 1:1054131/4‑150 (MQ=255) cTAAGGCCGCTGGCGGTATGAAAAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTGGTCACCCAGAATCAGTTGCAGGGTGTGCTTGCCCgg < 2:464522/150‑1 (MQ=255) tAAGGTCGCTGGCGGTATGAAAAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTGGTCACCCAGAATCAGTTGCAGGGTGTGCTTGCCCggg > 2:931025/1‑150 (MQ=255) aaggttgaagtgaaataaAAAAAGGGAGGCC‑ACCAGGGCCTTCCTTTTTTTTTTTCACTTCAACCTTGATCTTCTTCTACTCGACGCTAGGCTTGAATGGCACATGATACTGGTCACCCAGAATCAGTTGCAGGGTGTGCTTGCCCgggg > 2:1008834‑M1/19‑150 (MQ=255) gCTGGCGGTATGAAAAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTGGTCACCCAGAATCAGTTGCAGGGTGTGCTTGCCCGGGGTCAggg > 2:182511/1‑150 (MQ=255) gCTGGCGGTATGAAAAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTGGTCACCCAGAATCAGTTGCAGGGTGTGCTTGCCCGGGGTCAggg < 2:736939/150‑1 (MQ=255) tGGCGGTATGAAAAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAAcc > 2:361636/1‑57 (MQ=255) tGGCGGTATGAAAAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAAcc < 1:361636/57‑1 (MQ=255) gTATGAAAAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTGGTCACCCAGAATCAGTTGCAGGGTGTGCTTGCCCGGGGTCAGGGTAATGCt > 2:810595/1‑150 (MQ=255) taaAAAAAGGGAGGCCACCAG‑GGCCTCCCTTTTTTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTg < 2:976538‑M1/94‑1 (MQ=255) taaAAAAAGGGAGGCCACCAG‑GGCCTCCCTTTTTTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTg > 1:976538‑M1/4‑97 (MQ=255) AAAAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTGGTCACCCAGAATCAGTTGCAGGGTGTGCTTGCCCGGGGTCAGGGTAATGCTGGttt < 1:396817‑M1/150‑1 (MQ=255) AAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTGGTCACCCAGAATCAGTTGCAg < 2:334290‑M1/113‑1 (MQ=255) AAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTGGTCACCCAGAATCAGTTGCAg > 1:334290‑M1/1‑113 (MQ=255) aaagggaggccaccagggcctccctttttTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTGGTCACCCAGAATCAGTTGCAGGGTGTGCTTGCCCGGGGTCAGGGTAATGCTGGTTTCg > 2:257130‑M2/30‑150 (MQ=255) aaagggaggccaccagggcctccctttttTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTGGTCACCCAGAATCAGTTGCAGGGTGTGCTTGCCCGGGGTCAGGGTAATGCTGGTTTCg > 2:948199‑M2/30‑150 (MQ=255) aaagggaggccaccagggcctccctttttTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTGGTCACCCAGAATCAGTTGCAGGGTGTGCTTGCCCGGGGTCAGGGTAATGCTGGTTTCg < 1:948199‑M2/121‑1 (MQ=255) aaagggaggccaccagggcctccctttttTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTGGTCACCCAGAATCAGTTGCAGGGTGTGCTTGCCCGGGGTCAGGGTAATGCTGGTTTCg < 2:594571‑M2/121‑1 (MQ=255) aaagggaggccaccagggcctccctttttTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTGGTCACCCAGAATCAGTTGCAGGGTGTGCTTGCCCGGGGTCAGGGTAATGCTGGTTTCg > 1:594571‑M2/30‑150 (MQ=255) gggaggccaccagggcctccctttttTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTGGTCACCCAGAATCAGTTGCAGGGTGTGCTTGCCCGGGGTCAGGGTAATGCTGGTTTCg > 1:5096‑M2/27‑147 (MQ=255) gggaggccaccagggcctccctttttTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTGGTCACCCAGAATCAGTTGCAGGGTGTGCTTGCCCGGGGTCAGGGTAATGCTGGTTTCg < 2:5096‑M2/121‑1 (MQ=255) GGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTGGTCACCCAGAATCAGTTGCAGGGTGTGCTTGCCCGGGGTCAGGGTAATGCTGGTTTCGGTCt > 1:352155‑M1/1‑150 (MQ=255) ggaggccaccagggcctccctttttTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTGGTCACCCAGAATCAGTTGCAGGGTGTGCTTGCCCGGGGTCAGGGTAATGCTGGTTTCGGTCt > 1:150600‑M2/26‑150 (MQ=255) gaggccaccagggcctccctttttTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTGGTCACCCAGAAt > 1:636456‑M2/25‑99 (MQ=255) gaggccaccagggcctccctttttTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTGGTCACCCAGAAt < 2:636456‑M2/75‑1 (MQ=255) AGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTGGTCACCCAGAATCAGTTGCAGGGTGTGCTTGCCCggg > 1:179648‑M1/1‑123 (MQ=255) AGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTGGTCACCCAGAATCAGTTGCAGGGTGTGCTTGCCCggg < 2:179648‑M1/123‑1 (MQ=255) ctccctttttTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTGGTCACCCAGAATCAGTTGCAGGgt > 1:811384‑M2/11‑97 (MQ=255) ctccctttttTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTGGTCACCCAGAATCAGTTGCAGGgt < 2:811384‑M2/87‑1 (MQ=255) ctccctttttTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTGGTCACCCAGAATCAGTTGCAGGGTGTGCTTGCCCGGGGTCAGGGTAATGCTGGTTTCGGTCTGTGCCTTGCCGAAGt > 2:499833‑M2/11‑150 (MQ=255) cctttttTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTGGTCACCCAGAATCAGTTGCAGGGTGTGCTTGCCCGGGGTCAGGGTAATGCTGGTTTCGGTCTGTGCCTTGCCGAAGTgca < 1:182511‑M2/143‑1 (MQ=255) cctttttTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTGGTCACCCAGAATCAGTTGCAGGGTGTGCTTGCCCGGGGTCAGGGTAATGCTGGTTTCGGTCTGTGCCTTGCCGAAGTgca < 2:396817‑M2/143‑1 (MQ=255) ctttttTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTGGTCACCCAGAATCAGTTGCAGGGTGTGCTTGCCCGGGGTCAGGGTAATGCTGGTTTCGGTCTGTGCCTTGCCGAAGTgcag > 2:1000242‑M2/7‑150 (MQ=255) | TACGTGGTAATCGATGTTGACGCCGAGTACTCGGACCTGGCGCAGGAAAAACTGCAACAGGTCAAAGGCACCATCCGTTCGCGCGTCCTGTTCTAAGGTCGCTGGCGGTATGAAAAAGGGAGGCC‑CTGGTGGCCTCCCTTTTTTTATTTCACTTCAACCGTGATCTTCTTCGACTCGACGCTAGGCTTGAATGGCACATGATACTGGTCACCCAGAATCAGTTGCAGGGTGTGCTTGCCCGGGGTCAGGGTAATGCTGGTTTCGGTCTGTGCCTTGCCGAAGTGCAG > NC_002947/5882630‑5882916 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |