New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5201627 =	25 (0.810)	5 (0.220)	5/196	2.4	28.4%	intergenic (‑65/‑115)	PP_4582/PP_4583	membrane protein/putative Peptidase
	?	NC_002947	5201722 =	7 (0.310)					intergenic (‑160/‑20)	PP_4582/PP_4583	membrane protein/putative Peptidase

CGGTGAGCTTGAAGCCCACCAGCAGGCACCCTAAGGCGGCTACTGCGTACAAGCCCCAGGCGAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACC  >  NC_002947/5201478‑5201750                                                                                                                                                      |                                                                                                                            cGGTGAGCTTGAAGCCCACCAGCAGGCACCCTAAGGCGGCTACTGCGTACAAGCCCCAGGCGAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGtt                                                                                                                             >  2:193901/1‑150 (MQ=255)     gcctggtaggcgttttcagcttgcaggtaagcgagtacctcgggggtgtcgcgctgttgcagccaggcatacgggtcggtggcctggtcggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGcc                                                                                                                         <  2:641763‑M1/5‑1 (MQ=255)      cctggtaggcgttttcagcttgcaggtaagcgagtacctcgggggtgtcgcgctgttgcagccaggcatacgggtcggtggcctggtcggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGCCt                                                                                                                        >  2:685482‑M1/145‑150 (MQ=255)      aGCTTGAAGCCCACCAGCAGGCACCCTAAGGCGGCTACTGCGTACAAGCCCCAGGCGAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCt                                                                                                                        <  1:689682/150‑1 (MQ=255)        tggtaggcgttttcagcttgcaggtaagcgagtacctcgggggtgtcgcgctgttgcagccaggcatacgggtcggtggcctggtcggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGc                                                                                                                          <  1:115574‑M1/4‑1 (MQ=255)        tggtaggcgttttcagcttgcaggtaagcgagtacctcgggggtgtcgcgctgttgcagccaggcatacgggtcggtggcctggtcggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGc                                                                                                                          >  2:115574‑M1/143‑146 (MQ=255)              gCCCACCAGCAGGCACCCTAAGGCGGCTACTGCGTACAAGCCCCAGGCGAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGc                                                                                                                <  1:615350/150‑1 (MQ=255)                 caccaGCAGGCACCCTAAGGCGGCTACTGCGTACAAGCCCCAGGCGAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCctc                                                                                                             >  1:564901/1‑150 (MQ=255)                    cagcagGCACCCTAAGGCGGCTACTGCGTACAAGCCCCAGGCGAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTc                                                                                                          >  2:589274/1‑150 (MQ=255)                        cttgcaggtaagcgaggacctcgggggtgtcgcgctgttgcagccaggcatacgggtcggtggcctggtcggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGCCTGTGCCGGCCTCTTCGCgg                                                                                                      >  1:641763‑M1/127‑150 (MQ=255)                          tgcaggtaagcgagtacctcgggggtgtcgcgctgttgcagccaggcatacgggtcggtggcctggtcggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGCCTGTGCCGGCCTCTTCGCGGGt                                                                                                    >  2:306563‑M1/125‑150 (MQ=255)                             aggtaagcgagtacctcgggggtgtcgcgctgttgcagccaggcatacgggtcggtggcctggtcggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGCCTGTGCCGGCCTCTTCGCGGGTaaa                                                                                                 <  1:452031‑M1/29‑1 (MQ=255)                                tAAGGCGGCTACTGCGTACAAGCCCCAGGCGAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAAccc                                                                                              >  1:558882/1‑150 (MQ=255)                                     gagtacctcgggggtgtcgcgctgttgcagccaggcatacgggtcggtggcctggtcggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTcc                                                                                         <  2:649856‑M1/37‑1 (MQ=255)                                     gagtacctcgggggtgtcgcgctgttgcagccaggcatacgggtcggtggcctggtcggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTcc                                                                                         >  1:223288‑M1/114‑150 (MQ=255)                                     cggcTACTGCGTACAAGCCCCAGGCGAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTcc                                                                                         <  1:233691/150‑1 (MQ=255)                                              gggggtgtcgcgctgttgcagccaggcatacgggtcggtggcctggtcggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGCCTGTGCCGGCCTCTTCGCGGGTAAAc                                                                                                >  2:586765‑M1/105‑134 (MQ=255)                                              gggggtgtcgcgctgttgcagccaggcatacgggtcggtggcctggtcggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGCCTGTGCCGGCCTCTTCGCGGGTAAAc                                                                                                <  1:586765‑M1/30‑1 (MQ=255)                                                    aGCCCCAGGCGAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATc                                                                          <  2:325270/150‑1 (MQ=255)                                                        cgctgttgcagccaggcatacgggtcggtggcctggtcggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTg                                                                      >  2:452031‑M1/95‑150 (MQ=255)                                                          aGGCGAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGtt                                                                    <  1:193901/150‑1 (MQ=255)                                                                 ggTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCgg                                                             <  1:589274/150‑1 (MQ=255)                                                                 ggTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCgg                                                             <  2:564901/150‑1 (MQ=255)                                                                  gtgtAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCtgg                                                            <  1:253358/150‑1 (MQ=255)                                                                  gtgtAGGCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCggg                                                            <  2:132266/150‑1 (MQ=255)                                                                  gccaggcatacgggtcggtggcctggtcggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTcc                                                                                         <  1:279564‑M1/37‑1 (MQ=255)                                                                  gccaggcatacgggtcggtggcctggtcggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTcc                                                                                         >  2:279564‑M1/85‑121 (MQ=255)                                                                   tgtAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGt                                                           <  2:613126/150‑1 (MQ=255)                                                                                      gcctggtcggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGttt                                                         <  1:455486‑M1/69‑1 (MQ=255)                                                                                      gcctggtcggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGttt                                                         >  2:455486‑M1/65‑133 (MQ=255)                                                                                                          aaaGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTAccc                                                     <  1:252915/117‑1 (MQ=255)                                                                                                          aaaGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTAccc                                                     >  2:252915/1‑117 (MQ=255)                                                                                                            ggggttggggcttggttggcattgaaggtctcttgattggagTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGaa                                                >  2:70911‑M1/43‑120 (MQ=255)                                                                                                            ggggttggggcttggttggcattgaaggtctcttgattggagTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGaa                                                <  1:70911‑M1/78‑1 (MQ=255)                                                                                                                ttggggcttggttggcattgaaggtctcttgattggagTTGCCTGTGCCg                                                                                                                  <  2:141381‑M1/12‑1 (MQ=255)                                                                                                                ttggggcttggttggcattgaaggtctcttgattggagTTGCCTGTGCCg                                                                                                                  >  1:141381‑M1/39‑50 (MQ=255)                                                                                                                    cTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTg                                                                      <  2:565547/90‑1 (MQ=255)                                                                                                                    cTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTg                                                                      >  1:565547/1‑90 (MQ=255)                                                                                                                       tGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAagag                                             <  2:565205/112‑1 (MQ=255)                                                                                                                       tGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAagag                                             <  2:565625/112‑1 (MQ=255)                                                                                                                       tGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAagag                                             >  1:565625/1‑112 (MQ=255)                                                                                                                       tGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAagag                                             >  1:565205/1‑112 (MQ=255)                                                                                                                            aaCACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGccaacc  >  2:3335/1‑150 (MQ=255)                                                                                                                                                   tgtTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGtt                                                                    <  2:448044/61‑1 (MQ=255)                                                                                                                                                   tgtTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGtt                                                                    >  1:448044/1‑61 (MQ=255)                                                                                                                                                      |                                                                                                                            CGGTGAGCTTGAAGCCCACCAGCAGGCACCCTAAGGCGGCTACTGCGTACAAGCCCCAGGCGAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACC  >  NC_002947/5201478‑5201750

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.