New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2295818 =	40 (1.300)	9 (0.360)	7/222	2.1	23.4%	intergenic (+21/+112)	PP_5496/PP_2023	hypothetical protein/glutathione S‑transferase family protein
	?	NC_002947	2295903 =	26 (1.030)					intergenic (+106/+27)	PP_5496/PP_2023	hypothetical protein/glutathione S‑transferase family protein

CAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGC‑TTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGACCCCGGCAAACTGGCGC  >  NC_002947/2295758‑2296047                                                                                                                                                   |                                                                                                                                                 cAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGC‑TTCGCGGGCATGCCCGCTCCCACACGGAc                                                                                                                                              <  2:233663/150‑1 (MQ=255)  aaTTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGC‑TTCGCGGGCATGCCCGCTCCCACACGGAcc                                                                                                                                             <  2:402734/150‑1 (MQ=255)            cGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGC‑TTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGc                                                                                                                                   <  2:31038/150‑1 (MQ=255)              gCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGC‑TTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGccc                                                                                                                                 <  1:679795/150‑1 (MQ=255)                ccTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGC‑TTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGa                                                                                                                               >  1:328787/1‑150 (MQ=255)                  tGAGTGGCAACCCCCACCACTGATCTGGCTTGTGTGAGGCCCTTGTGGGAGCGAACCTGCCCGCGAACACCAGCATCGCCGGTGCCATGCACCTCGGTGCCCGC‑TTCGCGGGGATGCTCTCTACGACCCGCTCCCGTGTGCAGCCCGagg                                                                                                                             >  2:195010/1‑148 (MQ=255)                      tGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGTGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGC‑TTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTa                                                                                                                         >  2:578390/1‑150 (MQ=255)                      tGGAAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGC‑TTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTa                                                                                                                         <  2:49259/150‑1 (MQ=255)                              accaccacTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGC‑TTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGtt                                                                                                                           >  1:48863/1‑140 (MQ=255)                              accaccacTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGC‑TTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGtt                                                                                                                           <  2:48863/140‑1 (MQ=255)                                            ggCTTGTGTGAGGTCCTTGTGTGAGCGGGCATGCCCGCGCACCCCGGCAGAGTCGATGCTACCTGCCGCGGTGCCCGA‑TTCGCGGGAATGCCCGCTCCCACACTAACCGATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCtt                                                                                                   <  1:578390/150‑1 (MQ=255)                                             gCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGCCGC‑TTCGCGGGCATGCCCGCGCGCACACGGGCCCATGTGCAGCGGGATGTTTGATCAGCGGACCATGATTGCCtta                                                                                                  >  2:344856/1‑149 (MQ=37)                                               ttGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGC‑TTCGCGGGCATGCCCGCTCCCACACGGACCCAtgtg                                                                                                                                       <  2:608750/111‑1 (MQ=255)                                               ttGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGC‑TTCGCGGGCATGCCCGCTCCCACACGGACCCAtgtg                                                                                                                                       >  1:608750/1‑111 (MQ=255)                                                  tgtgAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGC‑TTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCt                                                                                                    >  2:620818/1‑143 (MQ=255)                                                  tgtgAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGC‑TTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCt                                                                                                    <  1:620818/143‑1 (MQ=255)                                                         tCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGC‑TTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGaa                                                                                      >  1:22188/1‑150 (MQ=255)                                                           cTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGC‑TTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAagc                                                                                    >  1:459422/1‑150 (MQ=255)                                                           cTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGC‑TTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAagc                                                                                    <  2:459422/150‑1 (MQ=255)                                                           cTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGAGGTGCACGC‑TTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAagc                                                                                    >  1:28255/1‑150 (MQ=255)                                                             tgtgGGAGAGGGCATGCTCGCGAACACCGGCAGAGCCGGTGCCATCCACCGAAGCGCTAGCGTTCG‑GTGTAGGCCTGGTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCTGCTGTCCATGATTGCCTTGAACAGCTCCGAagcca                                                                                  <  1:170875/150‑1 (MQ=255)                                                             TGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGC‑TTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAagcca                                                                                  <  1:556169‑M1/150‑1 (MQ=255)                                                               TGGGAGCGGGCAGGCCTGCGAACACGGGCAGAGCCGGTGCCATCCTCCGCGGTGCCCGC‑TTCGCCGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAagccagc                                                                                >  2:608040‑M1/1‑150 (MQ=255)                                                                ctggagccggcacgcccgcaaagcgtgcacctcggtggatggcaccggctctgccggtgttcgcgggcatgcccgctcccacaAGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAagccagc                                                                                <  2:724921‑M2/67‑1 (MQ=255)                                                                 GGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGC‑TTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGa                                                                                                 <  2:113168‑M1/131‑1 (MQ=255)                                                                 GGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGC‑TTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGa                                                                                                 >  1:113168‑M1/1‑131 (MQ=255)                                                                   gagcgggcatgcccgcgaagcgggcaccgcggtggatggcaccggctctgccggtgttcgcgggcatgcccgctcccacaAGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAagccagccag                                                                             >  1:724921‑M2/81‑149 (MQ=255)                                                                       gggcatgcccgcgaagcgggcaccgcggtggatggcaccggctctgccggtgttcgcgggcatgcccgctcccacaAAGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAACACCGAAACCAGCCaccccc                                                                         >  2:267478‑M2/77‑149 (MQ=255)                                                                        GCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGC‑TTCGCGGGCATGCCCGCTCCCACACGGACCTATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGACTTGAACAGCTCCGAAGCCAGCCACCCCTcc                                                                       <  1:95814‑M1/150‑1 (MQ=255)                                                                            tgcccgcgaagcgggcaccgcggtggatggcaccggctctgccggtgttcgcgggcatgcccgctcccacaCGGACCCATGTGCAGCCCGATGTTTACTCAGCGGACCATGATTGCCTTCAACAGCTCCGAAGCCAGCCACCCCTccagc                                                                    >  1:372186‑M2/72‑150 (MQ=255)                                                                            GCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGC‑TTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTccagcc                                                                   >  1:536612‑M1/1‑150 (MQ=255)                                                                              CCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGC‑TTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGttt                                                                                                                          <  1:717249‑M1/93‑1 (MQ=255)                                                                              CCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGC‑TTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGttt                                                                                                                          >  2:717249‑M1/1‑93 (MQ=255)                                                                               ccgcgaagcgggcaccgcggtggatggcaccggctctgccggtgttcgcgggcatgcccgctcccacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCt                                                                                                    >  1:117567‑M2/69‑115 (MQ=255)                                                                               ccgcgaagcgggcaccgcggtggatggcaccggctctgccggtgttcgcgggcatgcccgctcccacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCt                                                                                                    <  2:117567‑M2/47‑1 (MQ=255)                                                                               ccgcgaagcgggcaccgcggtggatggcaccggctctgccggtgttcgcgggcatgcccgctcccacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTccagccag                                                                 >  2:296165‑M2/69‑150 (MQ=255)                                                                               ccgcgaagcgggcaccgcggtggatggcaccggctctgccggtgttcgcgggcatgcccgctcccacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTccagccag                                                                 >  2:139040‑M2/69‑150 (MQ=255)                                                                                      acCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGC‑TTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGcac                                                         >  2:410113/1‑150 (MQ=255)                                                                                          gCAGAGCCGGTGCCATCCACCGCGGTGCCCGC‑TTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACAcgc                                                     <  2:22188/150‑1 (MQ=255)                                                                                            agagCCGGTGCCATCCACCGCGGTGCCCGC‑TTCGCGGGCAGGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCgg                                                   >  2:519571/1‑150 (MQ=255)                                                                                                            aCCGCGGTGCCCGC‑TTCGCGGGCATACCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCg                                   >  2:274919/1‑150 (MQ=255)                                                                                                                ctctgccggtgttcgcgggcatgcccgctcccacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAAc                                <  1:139040‑M2/115‑1 (MQ=255)                                                                                                                         c‑TTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGtt                      <  2:28255/150‑1 (MQ=255)                                                                                                                           ttcgcgggcatgcccgctcccacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTc                     <  1:350138‑M2/126‑1 (MQ=255)                                                                                                                             cgcgggcatgcccgctcccacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGa                   <  1:296165‑M2/128‑1 (MQ=255)                                                                                                                                 ggcatgcccgctcccacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGAcccc               >  2:115609‑M2/19‑150 (MQ=255)                                                                                                                                         cgctcccacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAAACACTCCGGTTCGGCACCggcaaccc       >  2:56396‑M2/11‑147 (MQ=255)                                                                                                                                           ctcccacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGACCCCGGCAAACTgg     <  1:274919‑M2/142‑1 (MQ=255)                                                                                                                                            tcccacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGACCCCGGCAAACTGgc    >  1:249764‑M2/8‑150 (MQ=255)                                                                                                                                              ccacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGc                                                                                            >  2:405694‑M2/6‑60 (MQ=255)                                                                                                                                              ccacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGc                                                                                            <  1:405694‑M2/55‑1 (MQ=255)                                                                                                                                              ccacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGACCCCGGCAAACTGgcgc  >  1:481957‑M2/6‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                                 CAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGC‑TTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGACCCCGGCAAACTGGCGC  >  NC_002947/2295758‑2296047

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.