New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4159142	41 (1.330)	10 (0.370)	10/238	1.6	21.9%	intergenic (+46/‑163)	PP_3661/PP_3662	membrane protein/hypothetical protein
	?	NC_002947	= 4159170	35 (1.290)					intergenic (+74/‑135)	PP_3661/PP_3662	membrane protein/hypothetical protein

TCAACCTGTGGCTGGTTGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCGGTATGGTGGTGTCAAAGAAGGATGTTTTACCCGCACAGGAAAGACTTAGATGCCTCAACGCCAT  >  NC_002947/4159032‑4159319                                                                                                                                           |                                                                                                                                                      tCAACCTGTGGCTGGTTGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCcctgtaggagc                                                                                                                                            >  1:741818‑M2/1‑139 (MQ=255)    aCCTGTGGCTGGTTGGCGGGGGGCTGGCGATTAACCTGGGGGTGGAGAAGCTGTTGGGGTGACTGGAGCCCGGGTCGGCTGCTTCGCCGGTAAAGCCGGTACTACAGGTTGGTGACGCCGGGACGACGGAAAGGGCACTGGAGTATCggg                                                                                                                                         >  2:301381/1‑150 (MQ=255)    aCCGGTGGCTGGTTGGCGGGGGGCTGGCGAGTGCCCTGGGGGTGCAGAAGTTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCcctgtaggagcggg                                                                                                                                         >  1:154402‑M2/1‑136 (MQ=255)     ccTGTGGCTGGTTGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCcctgtaggagcgggt                                                                                                                                        <  2:73165‑M2/150‑16 (MQ=255)      cTGTGGCTGGTTGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCcctgtaggagcgggtt                                                                                                                                       <  2:682011‑M2/150‑17 (MQ=255)       tgtgGCTGGTTGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTc                                                                                                                                      <  1:73165/150‑1 (MQ=255)         tgGCTGGTTGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCAc                                                                                                                                    <  1:327711/150‑1 (MQ=255)             tGGTTGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGAAAGGCCCCTGTAGGAGCGGGTTCACCcgc                                                                                                                                <  1:137281/150‑1 (MQ=255)               gTTGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGa                                                                                                                              >  2:247195/1‑150 (MQ=255)                   gCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGGAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAgca                                                                                                                          <  2:113253/150‑1 (MQ=255)                     ggggggCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCTAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAgcagg                                                                                                                        <  2:65191/150‑1 (MQ=255)                     ggggggCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAgcagg                                                                                                                        >  2:22319/1‑150 (MQ=255)                     ggggggCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAgcagg                                                                                                                        <  1:247195/150‑1 (MQ=255)                     ggggggCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAgcagg                                                                                                                        <  1:682011/150‑1 (MQ=255)                                     cccTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGCTCACCCGCGAAGCAGGCAGCTCGGTCTCAAgg                                                                                                        >  2:180824/1‑150 (MQ=255)                                      ccTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAGCTCGGTCTCAAGGt                                                                                                       >  1:68610/1‑150 (MQ=255)                                              tGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTcaca                                                                                               >  2:666666/1‑150 (MQ=255)                                                           gggCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTg                                                                                  >  2:255543/1‑150 (MQ=255)                                                                        aCCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGATGCCCTGCAGATGGCGAGGCCCTTGTAGCAGTTGTGTAACTCGCGAAGCAGGCAGCTCGGTTTAAAGGTTTATACCAGAGACCTCCGTTGCCGTCCACATTtc                                                                     >  2:173783/1‑150 (MQ=16)                                                                          cGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTc                                                                             <  2:284110/140‑1 (MQ=255)                                                                          cGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTc                                                                             >  1:284110/1‑140 (MQ=255)                                                                           gAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCg                                                                  <  1:666666/150‑1 (MQ=255)                                                                                ggCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCcctgtaggagcgggtttacccgcgaagcagccgactcggtctccagtcagcgcaacagcttctgcagccccggggtcatcgcaagccccc                                                             <  2:345275‑M2/150‑91 (MQ=255)                                                                                 gctgctTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTg                                                                                  <  1:520974/128‑1 (MQ=255)                                                                                 gctgctTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTg                                                                                  >  2:520974/1‑128 (MQ=255)                                                                                 gctgctTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCGGTAtgg                                                            >  1:752835/1‑150 (MQ=255)                                                                                 gctgctTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCGGTAt                                                              <  2:437410/148‑1 (MQ=255)                                                                                 gctgctTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCGGTAt                                                              >  1:437410/1‑148 (MQ=255)                                                                                   tgctTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCGGTAtggtg                                                          <  2:68610/150‑1 (MQ=255)                                                                                     ctTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCGGTATggtggt                                                        <  1:22319/150‑1 (MQ=255)                                                                                      ttCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCcctgtaggagcgggttcacccgcgaagcaggcagctcggtctccagtcagcccaacagcttctgcacccccagggtaatcgccagccccccgccaa                                                       <  2:193946‑M2/150‑97 (MQ=255)                                                                                             gTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCGGTATGgtggtg                                                       >  1:275784/1‑143 (MQ=255)                                                                                             gTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCGGTATGgtggtg                                                       <  2:275784/143‑1 (MQ=255)                                                                                              tAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCGGTATGGTGGTGTCAaagaa                                               <  1:255543/150‑1 (MQ=255)                                                                                                  cccGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCcctgtaggagcgggtttacccgcgaagcagccgactcggtctccagtcagcccaacagcttctgcacccccagggtaatcgccagccccccgccaaccagccacaggt                                           <  1:439071‑M2/150‑109 (MQ=255)                                                                                                  cccGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCGGTATGGTGGTGTCAAAGAAGGAt                                           >  1:530770/1‑150 (MQ=255)                                                                                                  cccGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCGGTATGGTGGTGTCAAAGAAGGAt                                           >  2:353869/1‑150 (MQ=255)                                                                                                   ccGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCcctgtaggagcgggttcacccgcgaagcaggcagctcggtctcaagtcagcccaacagcttctgcacccccaggg                                                                            >  2:362890‑M2/1‑41 (MQ=255)                                                                                                   ccGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCcctgtaggagcgggttcacccgcgaagcaggcagctcggtctcaagtcagcccaacagcttctgcacccccaggg                                                                            <  1:362890‑M2/116‑76 (MQ=255)                                                                                                   ccGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCGGTATGGTGGTGTCAAAGAAGGATg                                          >  1:520797/1‑150 (MQ=255)                                                                                                         cTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCcctgtaggagcgggtttacccgcgaagcagccgactcggtctccagtcagcccaacagcttctgcacccccagggtaatcgccagccccccgccaaccagccacaggttgaggat                                    >  2:439071‑M2/1‑35 (MQ=255)                                                                                                         cTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCGGTATGGTGGTGTCAAAGAAGGATGTTTTAc                                    <  2:520797/150‑1 (MQ=255)                                                                                                           aCAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCGGTATGGTGGTGTCAAAGAAGTATGTTTTAccc                                  <  1:180824/150‑1 (MQ=255)                                                                                                            cAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCcctgtaggagcgggtttacccgcgaagcagccgactcggtctccagtc                                                                                                       >  1:195539‑M2/1‑32 (MQ=255)                                                                                                            cAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCcctgtaggagcgggtttacccgcgaagcagccgactcggtctccagtc                                                                                                       <  2:195539‑M2/80‑49 (MQ=255)                                                                                                             aGGTGGGTGCTGCCCTGAAGACGGCAAGGCCcctgtaggagcgggttcacccgcgaagcagccgactcggtctccagtcagcccaacagcttctgcacccccagggtaatcgccagccccccgccaaccagccacaggttgaggatcgca                                <  2:548955‑M2/150‑120 (MQ=255)                                                                                                                           ctgtacaCGGCAAGGCCCTTGTAGGCGCGGGTTCCCCCGCGAACTAGGCAGCTCGGTCTCAAGTTTTTTCACAGCCCCCCTCGTTGCCGCCCACATTTCTCGGTATGGTGGTGTCAAAGAAGGATGTTTTACCCGCACAGGAAAGACTTa                  <  1:301381/144‑1 (MQ=255)                                                                                                                           cTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCGGTATGGTGGTGTCAAAGAAGGATGTTTTACCCGCACAGGAAAGACTTa                  >  2:74198/1‑150 (MQ=255)                                                                                                                                gACGGCAAGGCCcctgtaggagcgggttcacccgcgaagcagccgactcggtctccagtcagcccaacagcttctgcacccccagggtaatcgccagccccccgccaaccagccacaggttgaggatcgcaccggtggccagcgcccgtg             >  1:548955‑M2/1‑12 (MQ=255)                                                                                                                                           cccTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCGGTATGGTGGTGTCAAAGAAGGATGTTTTACCCGCACAGGAAAGACTTAGATGCCTCAACGCCAt  >  2:288405/1‑150 (MQ=255)                                                                                                                                           |                                                                                                                                                      TCAACCTGTGGCTGGTTGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCGGTATGGTGGTGTCAAAGAAGGATGTTTTACCCGCACAGGAAAGACTTAGATGCCTCAACGCCAT  >  NC_002947/4159032‑4159319

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.