Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,460,273:1 | +A | 12.1% | coding (132/1446 nt) | PP_3075 ← | transcriptional regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,460,273 | 1 | . | A | 12.1% | 107.9 / 11.8 | 33 | coding (132/1446 nt) | PP_3075 | transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base . (12/17); new base A (2/2); total (14/19) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GCCGGGGATCACTGTTTCGCACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCCGCGAAAAGGCCAGGCCTGAAAACTCATCGTCGG > NC_002947/3460129‑3460410 | gCCGGGGATCACTGTTTCGCACGGCTGGCCGATGGCACTGGCAGCGTAGGCCAGGCCAAAGCGTCGGGCGTATCGTTCTTTCATTCTGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGaa < 2:84003/150‑1 (MQ=255) cGGGGATCACTGTTTCGCACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACa > 2:77224/1‑150 (MQ=255) cACTGTTTCGCACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCACAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACagcgagag > 2:118050/1‑148 (MQ=255) tGTTTCGCACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGAt > 2:24413/1‑150 (MQ=255) gCACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAg > 1:359875/1‑150 (MQ=255) ggCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGc < 1:24413/150‑1 (MQ=255) tGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGt < 2:359875/150‑1 (MQ=255) gCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTAc < 2:182192/150‑1 (MQ=255) gCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTggggg < 1:360330/150‑1 (MQ=255) cGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGCTGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGa < 1:617629/150‑1 (MQ=255) ccaAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGgctgtcgctg > 1:241764/1‑150 (MQ=255) caAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGgctgtcgctgt > 2:477896/1‑150 (MQ=255) gTCGGGCGTAGCGTTCGTTCATCCAGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGgctgtcgctgtc > 1:315483/1‑145 (MQ=255) gTCGGGCGTAGCGTTCGTTCATCCAGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGgctgtcgctgtc < 2:315483/145‑1 (MQ=255) ttcATCCAGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGaa > 1:323172/1‑150 (MQ=255) cGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTg < 2:323172/150‑1 (MQ=255) gATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTgg > 1:574727/1‑150 (MQ=255) gATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTgg > 1:573915/1‑150 (MQ=255) aTGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGc < 2:574727/150‑1 (MQ=255) aTGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGc < 2:573915/150‑1 (MQ=255) cTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGccc < 2:729347/150‑1 (MQ=255) tGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCcg > 1:377592/1‑150 (MQ=255) ggCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCcgc < 1:477896/150‑1 (MQ=255) ggCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGAGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCagc < 1:118050/150‑1 (MQ=255) acgaTCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCCGCGAAAaggc > 1:723739/1‑150 (MQ=255) cACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCCGCGAAAaggccaggc < 2:241764/150‑1 (MQ=255) cACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCCGCGAAAaggccaggc < 1:77224/150‑1 (MQ=255) cGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCCGCGAAAAGGCCAGGCCTGAAAACTCa < 2:377592/150‑1 (MQ=255) cGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCCGCGAAAAGGCCAGGCCTGAAAACTCa < 2:305678/150‑1 (MQ=255) gcTGTTCGA‑GATCATCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACaa < 1:751113/113‑1 (MQ=255) gcTGTTCGA‑GATCATCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACaa > 2:751113/2‑114 (MQ=255) tGTTCGA‑GATCATCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCCGCGACAAGGCCAGGCCTGAAAACTCATCGTCgg > 2:349312/1‑149 (MQ=255) tGTTCGA‑GATCATCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCCGCGAAAAGGCCAGGCCTGAAAACTCATCGTCgg < 1:349312/149‑1 (MQ=255) | GCCGGGGATCACTGTTTCGCACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCCGCGAAAAGGCCAGGCCTGAAAACTCATCGTCGG > NC_002947/3460129‑3460410 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |