Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,468,121:1 | +A | 9.5% | coding (819/1047 nt) | mltB ← | membrane‑bound lytic murein transglycosylase B |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,468,121 | 1 | . | A | 9.5% | 155.4 / 11.8 | 42 | coding (819/1047 nt) | mltB | membrane‑bound lytic murein transglycosylase B |
Reads supporting (aligned to +/- strand): ref base . (17/21); new base A (2/2); total (19/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.86e-01 |
GAGTGATCGCGTAGAAGTTCTTCAGGCCCATCCAGTACTCGGGGCCGCTCTCGCCCTCGAGACGGAAGGCGGTAACCGGCAGATCATCGCGCAGCGAATCATGAACCGA‑CCAGCCAAGCGTACGCAACTCCCCTACCGTTTTCACCGGC‑TCGATGCCGGTGGTCAGGCCTTCGTCGGCGCGCTCACCTTCCACCCAGGCGCGACTGACCACACCCTCGCCGGCCACCCAGCCGTGGCGCTTGAAGTAGCTGGCCACGCTGCCGATGGCATCGTCAGGGTTGTTCCAGATATTGATATG > NC_002947/5467973‑5468270 | gAGTGATCGCGTAGAAGTTCTTCAGGCCCATCCAGTACTCGGGGCCGCTCTCGCCCTCGAGACGGAAGGCGGTAACCGGCAGATCATCGCGCAGCGAATCATGAACCGA‑CCAGCCAAGCGTACGCAACTCCCCTACCGTTTTCACCGGC‑t > 2:279102/1‑150 (MQ=255) aGTGATCGCGTAGAAGTTCTTCAGGCCCATCCAGTACTCGGGGCCGCTCTCGCCCTCGAGACGGAAGGCGGTAACCGGCAGATCATCGCGCAGCGAATCATGAACCGA‑CCAGCCAAGCGTACGCAACTCCCCTACCGTTTTCACCGGC‑Tc > 1:506624/1‑150 (MQ=255) tCGCGTAGAAGTTCTTCAGGCCCATCCAGTACTCGGGGCCGCTCTCGCCCTCGAGACGGAAGGCGGTAACCGGCAGATCATCGCGCAGCGAATCATGAACCGA‑CCAGCCAAGCGTACGCAACTCCCCTACCGTTTTCACCGGC‑TCGATGc < 2:377492/150‑1 (MQ=255) gcgTAGAAGTTCTTCAGGCCCATCCAGTACTCGGGGCCGCTCTCGCCCTCGAGACGGAAGGCGGTAACCGGCAGATCATCGCGCAGCGAATCATGAACCGA‑CCAGCCAAGCGTACGCAACTCCCCTACCGTTTTCACCGGC‑TCGATGCCg < 2:506624/150‑1 (MQ=255) tAGAAGTTCTTCAGGCCCATCCAGTACTCGGGGCCGCTCTCGCCCTCGAGACGGAAGGCGGTAACCGGCAGATCATCGCGCAGCGAATCATGAACCGA‑CCAGCCAAGCGTACGCAACTCCCCTACCGTTTTCACCGGC‑TCGATGCCggtg < 2:470808/150‑1 (MQ=255) ttcttcAGGCCCATCCAGTACTCGGGGCCGCTCTCGCCCTCGAGACGGAAGGCGGTAACCGGCAGATCATCGCGCAGCGAATCATGAACCGA‑CCAGCCAAGCGTACGCAACTCCCCTACCGTTTTCACCGGC‑TCGATGCCGGTGGTCAgg > 1:139572/1‑150 (MQ=255) ttcAGGCCCATCCAGTACTCGGGGCCGCTCTCGCCCTCGAGACGGAAGGCGGTAACCGGCAGATCATCGCGCAGCGAATCATGAACCGA‑CCAGCCAAGCGTACGCAACTCCCCTACCGTTTTCACCGGC‑TCGATGCCGGTGGTCAGGCCt < 2:329940/150‑1 (MQ=255) tCCAGTACTCGGGGCCGCTCTCGCCCTCGAGACGGAAGGCGGTAACCGGCAGATCATCGCGCAGCGAATCATGAACCGA‑CCAGCCAAGCGTACGCAACTCCCCTACCGTTTTCACCGGC‑TCGATGCCGGTGGTCAGGCCTTCGTCGgcgc > 2:268479/1‑150 (MQ=255) aGTACTCGGGGCCGCTCTCGCCCTCGAGACGGAAGGCGGTAACCGGCAGATCATCGCGCAGCGAATCATGAACCGA‑CCAGCCAAGCGTACGCAACTCCCCTACCGTTTTCACCGGC‑TCGATGCCGGTGGTCAGGCCTTCGTCGGCGCGCt > 2:591692/1‑150 (MQ=255) tACTCGGGGCCGCTCTCGCCCTCGAGACGGAAGGCGGTAACCGGCAGATCATCGCGCAGCGAATCATGAACCGA‑CCAGCCAAGCGTACGCAACTCCCCTACCGTTTTCACCGGC‑TCGATGCCgg < 1:231527/124‑1 (MQ=255) tACTCGGGGCCGCTCTCGCCCTCGAGACGGAAGGCGGTAACCGGCAGATCATCGCGCAGCGAATCATGAACCGA‑CCAGCCAAGCGTACGCAACTCCCCTACCGTTTTCACCGGC‑TCGATGCCgg > 2:231527/1‑124 (MQ=255) cTCGGGGCCGCTCTCGCCCTCGAGACGGAAGGCGGTAACCGGCAGATCATCGCGCAGCGAATCATGAACCGA‑CCAGCCAAGCGTACGCAACTCCCCTACCGTTTTCACCGGC‑TCGATGCCGGTGGTCAGGCCTTCGTCGGCGCGCTCAcc > 2:280173/1‑150 (MQ=255) gggCCGCCCACGCCGTCGACACGGAAGGCGGTAACCGGCAGATCATCGCGCAGAGCACCA‑GCGCGGAGGCCGCGAAGCCCACGCACCTCCCCCACCGTTTTCACCGGG‑TCGATGCCGGTGTTCAGGCCTTCGTCGGCGCGCTCACCTTcc < 1:733641/150‑1 (MQ=255) gCCGCTCTCGCCCTCGAGACGGAAGGCGGTAACCGGCAGATCATCGCGCAGCGAATCATGAACCGA‑CCAGCCAAGCGTACGCAACTCCCCTACCGTTTTCACCGGC‑TCGATGCCGGTGGTCAGGCCTTCGTCGGCGCGCTCACCTTCCAc < 1:279102/150‑1 (MQ=255) ccGCTCTCGCCCTCGAGACGGAAGGCGGTAACCGGCAGATCATCGCGCAGCGAATCATGAACCGA‑CCAGCCAAGCGTACGCAACTCCCCTACCGTTTTCACCGGC‑TCGATGCCGGTGGTCAGGCCTTCGTCGGCGCGCTCACCTTCCAcc < 1:399581/150‑1 (MQ=255) gCTCTCGCCCTCGAGACGGAAGGCGGTAACCGGCAGATCATCGCGCAGCGAATCATGAACCGA‑CCAGCCAAGCGTACGCAACTCCCCTACCGTTTTCACCGGC‑TCGATGCCGGTGGTCAGGCCTTCGTCGGCGCGCTCACCTTCCACCCa > 2:722300/1‑150 (MQ=255) gCTCTCGCCCTCGAGACGGAAGGCGGTAACCGGCAGATCATCGCGCAGCGAATCATGAACCGA‑CCAGCCAAGCGTACGCAACTCCCCTACCGTTTTCACCGGC‑TCGATGCCGGTGGTCAGGCCTTCGTCGGCGCGCTCACCTTCCACCCa > 2:78468/1‑150 (MQ=255) cGAGACGGAAGGCGGTAACCGGCAGATCATCGCGCAGCGAATCATGAACCGA‑CCAGCCAAGCGTACGCAACTCCCCTACCGTTTTCACCGGC‑TCGATGCCGGTGGTCAGGCCTTCGTCGGCGCGCTCACCTTCCACCCAGGCGCGACTGa < 1:268479/150‑1 (MQ=255) gaCGGAAGGCGGTAACCGGCAGATCATCGCGCAGCGAATCATGAACCGA‑CCAGCCAAGCGTACGCAACTCCCCTACCGTTTTCACCGGC‑TCGATGCCGGTGGTCAGGCCTTCGTCGGCGCGCTCACCTTCCACCCAGGCGCGACTGACca < 1:280173/150‑1 (MQ=255) ggAAGGCGGTAACCGGCAGATCATCGCGCAGCGAATCATGAACCGA‑CCAGCCAAGCGTACGCAACTCCCCTACCGTTTTCACCGGC‑TCGATGCCGGTGGTCAGGCCTTCGTCGGCGCGCTCACCTTCCACCCAGGCGCGACTGACCacac > 1:642911/1‑150 (MQ=255) gAAGGCGGTAACCGGCAGATCATCTCGCAGCAAATCATGAACCGA‑CCAGCCAAGCGTTCGCAACTCCCCTACCGTTTTCACCGGC‑TCGATGCCGGTGGTCAGGCCTTCGTCGGCGCGCTCACCTTCCACCCAGGCGCGACTGACCACAcc < 1:625372/150‑1 (MQ=255) ggTAACCGGCAGATCATCGCGCAGCGAATCATGAACCGA‑CCAGCCAAGCGTACGCAACTCCCCTACCGTTTTCACCGGCATCGA‑GCCggtgaaaa < 2:398936/95‑5 (MQ=255) ggTAACCGGCAGATCATCGCGCAGCGAATCATGAACCGA‑CCAGCCAAGCGTACGCAACTCCCCTACCGTTTTCACCGGCATCGA‑GCCggtgaaaa > 1:398936/1‑91 (MQ=255) aCCGGCAGATCATCGCGCAGCGAATCATGAACCGA‑CCAGCCAAGCGTACGCAACTCCCCTACCGTTTAGTGCTGC‑TCGATGCCGGTGGTCAGGCCTTCGTCGGCGCGCTCACCTTCCACCCAGGCGCGACTGACCACACCCTCGCCGGcc < 1:422573/150‑1 (MQ=255) aCCGGCAGATCATCGCGCAGCGAATCATGAACAGA‑CCAGCCAAGCGTACGCAACTCCCCTACCGTTTTCACCGGC‑TCGATGCCGGTGGTCAGGCCTTCGTCGGCGCGCTCACCTTCCACCCAGGCGCGACTGACCACACCCTCGCCGGcc > 2:86069/1‑150 (MQ=255) aTGAACCGA‑CCAGCCAAGCGTACGCAACTCCCCTACCGTTTTCACCGGC‑TCGATGCCGGTGGTCAGGCCTTCGTCGGCGCGCTCACCTTCCACCCAGGCGCGACTGACCACACCCTCGCCGGCCACCCAGCCGTGGCGCTTGAAGTa > 1:442424/1‑147 (MQ=255) aTGAACCGA‑CCAGCCAAGCGTACGCAACTCCCCTACCGTTTTCACCGGC‑TCGATGCCGGTGGTCAGGCCTTCGTCGGCGCGCTCACCTTCCACCCAGGCGCGACTGACCACACCCTCGCCGGCCACCCAGCCGTGGCGCTTGAAGTa < 2:442424/147‑1 (MQ=255) aaCCGA‑CCAGCCAAGCGTACGCAACTCCCCTACCGTTTTCACCGGC‑TCGATGCCGGTGGTCAGGCCTTCGTCGGCGCGCTCACCTTCCACCCAGGCGCGACTGACCACACCCTCGCCGGCCACCCAGCCGTGGCGCTTGAAGTAGCTGGc > 2:197906/1‑150 (MQ=255) aCCGA‑CCAGCCAAGCGTACGCAACTCCCCTACCGTTTTCACCGGC‑TCGATGCCGGTGGTCAGGCCTTCGTCGGCGCGCTCACCTTCCACCCAGGCGCGACTGACCACACCCTCGCCGGCCACCCAGCCGTGGCGCTTGAAGTAGCTGGcc > 2:236333/1‑150 (MQ=255) cAGCCAAGCGTACGCAACTCCCCTACCGTTTTCACCGGC‑TCGATg > 2:2774/1‑45 (MQ=255) cAGCCAAGCGTACGCAACTCCCCTACCGTTTTCACCGGC‑TCGATg < 1:2774/45‑1 (MQ=255) aaGCGTACGCAACTCCCCTACCGTTTTCACCGGC‑TCGATGCCGGTGGTCAGGCCTTCGTCGGCGCGCTCACCTTCCACCCAGGCGCGACTGACCACACCCTc > 1:380836/1‑102 (MQ=255) aaGCGTACGCAACTCCCCTACCGTTTTCACCGGC‑TCGATGCCGGTGGTCAGGCCTTCGTCGGCGCGCTCACCTTCCACCCAGGCGCGACTGACCACACCCTc < 2:380836/102‑1 (MQ=255) aaGCGTACGCAACTCCCCTACCGTTTTCACCGGC‑TCGATGCCGGTGGTCAGGCCTTCGTCGGCGCGCTCACCTTCCACCCAGGCGCGACTGACCACACCCTCGCCGGCCACCCAGCCGTGGCGCTTGAAGTAGCTGGCCACGCTGCCGAt < 2:642911/150‑1 (MQ=255) aCTCCCCTACCGTTTTCACCGGC‑TCGATGCCGGTGGTCAGGCCTTCGTCGGCGCGCTCTCCTTCCACCCAGGCGCGACTGACCACACCCTCGCCGGCCACCCAGCCGTGGCGCTTGAAGTAGCTGGCCACGCTGCCGATGGCATCGTCAg < 1:384520/150‑1 (MQ=255) aCTCCCCTACCGTTTTCACCGGC‑TCGATGCCGGTGGTCAGGCCTTCGTCGGCGCGCTCACCTTCCACCCAGGCGCGACTGACCACACCCTCGCCGGCCACCCAGCCGTGGCGCTTGAAGTAGCTGGCCACGCTGCCGATGGCATCGTCAg < 1:86069/150‑1 (MQ=255) tCCCCTACCGTTTTCACCGGC‑TCGATGCCGGTGGTCAGGCCTTCGTCGGCGCGCTCACCTTCCACCCAGGCGCGACTGACCACACCCTCGCCGGCCACCCAGCCGTGGCGCTTGAAGTAGCTGGCCACGCTGCCGATgg > 2:239927/1‑139 (MQ=255) tCCCCTACCGTTTTCACCGGC‑TCGATGCCGGTGGTCAGGCCTTCGTCGGCGCGCTCACCTTCCACCCAGGCGCGACTGACCACACCCTCGCCGGCCACCCAGCCGTGGCGCTTGAAGTAGCTGGCCACGCTGCCGATgg < 1:239927/139‑1 (MQ=255) ccTACCGTTTTCACCGGC‑TCGATGCCGGTGGTCAGGCCTTCGTCGGCGCGCTCACCTTCCACCCAGGCGCGACTGACCACACCCTCGCCGGCCACCCAGCCGTGGCGCTTGAAGTAGCTGGCCACGCTGCCGATGGCATCGTCAGGgttg > 1:592300/1‑150 (MQ=255) aCCGTTTTCACCGGC‑TCGATGCCGGTGGTCAGGCCTTCGTCGGCGCGCTCACCTTCCACCCAGGCGCGACTGACCACACCCTCGCCGGCCACCCAGCCGTGGCGCTTGAAGTAGCTGGCCACGCTGCCGATGGCATCGTCAGGGTTGTTc < 2:139572/150‑1 (MQ=255) ttttCACCGGC‑TCGATGCCGGTGGTCAGGCCTTCGTCGGCGCGCTCACCTTCCACCCAGGCGCGACTGACCACACCCTCGCCGGCCACCCAGCCGTGGCGCTTGAAGTAGCTGGCCACGCTGCCGATGGCATCGTCAGGGTTGTTCCAGa < 2:424754/150‑1 (MQ=255) accACCGGCATCGA‑GCCGGTGGTCAGGCCTTCGTCGGCGCGCTCACCTTc > 2:525414/3‑50 (MQ=21) accACCGGCATCGA‑GCCGGTGGTCAGGCCTTCGTCGGCGCGCTCACCTTc < 1:525414/48‑1 (MQ=21) c‑TCGATGCCGGTGGTCAGGCCTTCGTCGGCGCGCTCACCTTCCACCCAGGCGCGACTGACCACACCCTCGCCGGCCACCCAGCCGTGGCGCTTGAAGTAGCTGGCCACGCTGCCGATGGCATCGTCAGGGTTGTTCCAGATATTGATATg < 1:78468/150‑1 (MQ=255) c‑TCGATGCCGGTGGTCAGGCCTTCGTCGGCGCGCTCACCTTCCACCCAGGCGCGACTGACCACACCCTCGCCGGCCACCCAGCCGTGGCGCTTGAAGTAGCTGGCCACGCTGCCGATGGCATCGTCAGGGTTGTTCCAGATATTGATATg < 1:197906/150‑1 (MQ=255) | GAGTGATCGCGTAGAAGTTCTTCAGGCCCATCCAGTACTCGGGGCCGCTCTCGCCCTCGAGACGGAAGGCGGTAACCGGCAGATCATCGCGCAGCGAATCATGAACCGA‑CCAGCCAAGCGTACGCAACTCCCCTACCGTTTTCACCGGC‑TCGATGCCGGTGGTCAGGCCTTCGTCGGCGCGCTCACCTTCCACCCAGGCGCGACTGACCACACCCTCGCCGGCCACCCAGCCGTGGCGCTTGAAGTAGCTGGCCACGCTGCCGATGGCATCGTCAGGGTTGTTCCAGATATTGATATG > NC_002947/5467973‑5468270 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |