New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5870317 = | 33 (1.170) | 5 (0.230) | 5/188 | NT | 20.3% | intergenic (+22/+112) | PP_5144/ptsP | hypothetical protein/phosphoenolpyruvate‑dependent regulator |
? | NC_002947 | 5870410 = | 14 (0.650) | intergenic (+115/+19) | PP_5144/ptsP | hypothetical protein/phosphoenolpyruvate‑dependent regulator |
CAACTGGCCCTGAAGAACCTTGGGTTGGCGCGGATGATTGGGCCTGGGGCTAATAAAACCCTGTGAGGGTGATGCTGTTTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5870494‑5870317 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCTTGG > NC_002947/5870410‑5870556 CAACTGGCCCTGAAGAACCTTGGGTTGGCGCGGATGATTGGGCCTGGGGCTAATAAAACCCTGTGAGGGTGATGCTGTTTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCCCGTACACACATCTGGGGTTGGACCCAGGCCGTTG < 1:238015/150‑1 ACTGGCCCTGAAGAACCTTGGGTTGGCGCGGATGATTGGGCCTGGGGCTAATAAAACCCTGTGAGGGTGATGCTGTTTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTA < 2:243966/150‑1 CTGGCCCTGAAGAACCTTGGGTTGGCGCGGATGATTGGGCCTGGGGCTAATAAAACCCTGTGAGGGTGATGCTGTTTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAG < 1:310400/150‑1 TGAAGAACCTTGGGTTGGCGCGGATGATTGGGCCTGGGGCTAATAAAACCCTGTGAGGGTGATGCTGTTTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGG < 1:438090/150‑1 TGAAGAACCTTGGGTTGGCGCGGATGATTGGGCCTGGGGCTAATAAAACCCTGTGAGGGTGATGCTGTTTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTCGTAGGAGCGGG < 2:245202/150‑1 AGAACCTTGGGTTGGCGCGGATGATTGGGCCTGGGGCTAATAAAACCCTGTGAGGGTGATGCTGTTTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTC > 2:197591/1‑150 TTGGGTTGGCGCGGATGATTGGGCCTGGGGCTAATAAAACCCTGTGAGGGTGATGCTGTTTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGC < 1:197591/150‑1 TTGGCGCGGATGATTGGGCCTGGGGCTAATAAAACCCTGTGAGGGTGATGCTGTTTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGA < 2:519466/150‑1 GGTGATGCTGTTTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAG > 1:581854/1‑106 GGTGATGCTGTTTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAG < 2:581854/106‑1 CCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTAT < 1:590835/108‑1 CCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTAT > 2:590835/1‑108 CCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAG > 2:63813/1‑150 GCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGG > 1:657615/1‑150 CAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTT < 2:657615/150‑1 TAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTC < 2:238015/150‑1 GAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTCCGGGTTGTCATGGCTCAAG > 2:372540/1‑150 GCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGC > 1:513151/1‑150 GCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGC < 1:243966/150‑1 CGGGTTCACCCGCGAATAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGG > 1:87031/1‑131 CGGGTTCACCCGCGAATAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGG < 2:87031/131‑1 TTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGG > 1:127523/1‑150 TTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGG > 1:315799/1‑150 ACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAA > 2:156022/1‑81 ACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAA < 1:156022/81‑1 GGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCTTG < 2:315799/150‑1 GGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCTTG < 1:647515/150‑1 GCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCTTGG < 1:63813/150‑1 CCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAG > 2:492550/1‑127 CCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAG < 1:492550/127‑1 CAACTGGCCCTGAAGAACCTTGGGTTGGCGCGGATGATTGGGCCTGGGGCTAATAAAACCCTGTGAGGGTGATGCTGTTTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5870494‑5870317 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCTTGG > NC_002947/5870410‑5870556 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |