New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5896257 = | 23 (0.820) | 4 (0.150) | 4/234 | NT | 14.3% | intergenic (‑26/+159) | cysU/sbp‑II | sulfate ABC transporter permease CysT/sulfate ABC transporter substrate‑binding protein |
? | NC_002947 | 5896277 = | 26 (0.970) | intergenic (‑46/+139) | cysU/sbp‑II | sulfate ABC transporter permease CysT/sulfate ABC transporter substrate‑binding protein |
AGGAAAGCGGGGCCGCGTGCGGCCCATTCGCGGCACAAGGTCGCTTCCACAAGGAACCATGATCTCCTGTGGGAGCGGCCTTGTGTCGCGAATGGGCTGCCAAGCAGCCCCAGGATTCAAAAGCTTGCACCGGCCCGGGATTGTTTCCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5896408‑5896257 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgggcCGGTGCAAGCTTTTGAATCCTGGGGCTGCTTGGCAGCCCATTCGCGACACAAGGCCGCTCCCACAGGAGATCATGGTTCCTTGTGGAAGCGACCTTGTGCCGCGAATGGGCCGCACGCGGCCCCGCTTTCCTTTGGCGCTTACTGTGC > NC_002947/5896277‑5896424 AGGAAAGCGGGGCCGCGTGCGGCCCATTCGCGGCACAAGGTCGCTTCCCCAAGGGACGATTATCTCCTGTGGGAGCGGCCTTGTGTCGCGAATGGGCTGCCAAGCAGCCCCAGGATTCAAAAGCTTGCACCGGCCCGGGATTGTTTCCGG > 2:441947/1‑150 ACAAGGAACCATGATCTCCTGTGGGAGCGGCCTTGTGTCGCGAATGGGCTGCCAAGCAGCCCCAGGATTCAAAAGCTTGCACCGGCCCGGAAACAATCCCGGGCCGGTGCAAGCTTTT < 1:664125/118‑1 ACAAGGAACCATGATCTCCTGTGGGAGCGGCCTTGTGTCGCGAATGGGCTGCCAAGCAGCCCCAGGATTCAAAAGCTTGCACCGGCCCGGAAACAATCCCGGGCCGGTGCAAGCTTTT > 2:664125/1‑118 GAACCATGATCTCCTGTGGGAGCGGCCTTGTGTCGCGAATGGGCTGCCAAGCAGCCCCAGGATTCAAAAGCTTGCACCGGCCCGGAAACAATCCCGGGCCGGTGCAAGCTTT > 1:556461/1‑112 GAACCATGATCTCCTGTGGGAGCGGCCTTGTGTCGCGAATGGGCTGCCAAGCAGCCCCAGGATTCAAAAGCTTGCACCGGCCCGGAAACAATCCCGGGCCGGTGCAAGCTTT < 2:556461/112‑1 CCGGGCCGGTGCAAGCTTTTGAATCCTGGGGCTGCTTGGCAGCCCATTCGCGACACAAGGCCGCTCCCACAGGAGATCATGGTTCCTTGTGGAAGCGACCTTG > 1:250245/1‑103 CCGGGCCGGTGCAAGCTTTTGAATCCTGGGGCTGCTTGGCAGCCCATTCGCGACACAAGGCCGCTCCCACAGGAGATCATGGTTCCTTGTGGAAGCGACCTTG < 2:250245/103‑1 CGGGCCGGTGCAAGCTTTTGAATCCTGGGGCTGCTTGGCAGCCCATTCGCGACACAAGGCCGCTCCCACAGGAGATCATGGTTCCTTGTGGAAGCGACCTTGTGCCGCGAATGGGCCGCACGCGGCCCCGCTTTCCTTTGGCGCTTACTG > 1:328393/1‑150 CGGGCCGGTGCAAGCTTTTGAATCCTGGGGCTGCTTGGCAGCCCATTCGCGACACAAGGCCGCTCCCACAGGAGATCATGGTTCCTTGTGGAAGCGACCTTGTGCCGCGAATGGGCCGCACGCGGCCCCGCTTTCCTTTGGCGCTTACTG < 1:385508/150‑1 GCCGGTGCAAGCTTTTGAATCCTGGGGCTGCTTGGCAGCCCATTCGCGACACAACGCCGCTCCCACAGGAGATCATGGTTCCTTGTGGAAGCGACCTTGTGCCGCGAATGGGCCGCACGCGGCCCCGCTTTCCTTTGGCGCTTACTGTGC < 2:365537/150‑1 AGGAAAGCGGGGCCGCGTGCGGCCCATTCGCGGCACAAGGTCGCTTCCACAAGGAACCATGATCTCCTGTGGGAGCGGCCTTGTGTCGCGAATGGGCTGCCAAGCAGCCCCAGGATTCAAAAGCTTGCACCGGCCCGGGATTGTTTCCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5896408‑5896257 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgggcCGGTGCAAGCTTTTGAATCCTGGGGCTGCTTGGCAGCCCATTCGCGACACAAGGCCGCTCCCACAGGAGATCATGGTTCCTTGTGGAAGCGACCTTGTGCCGCGAATGGGCCGCACGCGGCCCCGCTTTCCTTTGGCGCTTACTGTGC > NC_002947/5896277‑5896424 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |