New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 204059 = | 4 (0.140) | 4 (0.150) | 4/234 | NT | 36.7% | coding (9565/26049 nt) | PP_0168 | putative surface adhesion protein |
? | NC_002947 | 204088 = | 10 (0.370) | coding (9594/26049 nt) | PP_0168 | putative surface adhesion protein |
CGAGCCTGGTACCCCAGGCAACCCGGGCGGCAGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACT > NC_002947/203911‑204199 | ggcaccgcccaactcgaggttctcgaaggtcgcaccagtggcgtccaccgccgagttgatacccaggctgatctggccagcgtcgttgtagacgtcatcaccctgagcagcgtgggtgtacggcgcgctggtttcaccggccttgatgGt > 2:219758‑M1/149‑150 (MQ=255) accgcccaactcgaggttctcgaaggtcgcaccagtggcgtccaccgccgagttgatacccaggctgatctggccagcgtcgttgtagacgtcatcaccctgagcagcgtgggtgtacggcgcgctggtttcaccggccttgatgGTGAc > 1:345897‑M1/146‑150 (MQ=255) gtcgttgtagacgtcatcaccctgagcagcgtgggtgtacggcgcgctggtttcaccggccttgatgGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGaaa > 1:566760‑M1/68‑113 (MQ=255) gtcgttgtagacgtcatcaccctgagcagcgtgggtgtacggcgcgctggtttcaccggccttgatgGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGaaa < 2:566760‑M1/46‑1 (MQ=255) cctgagcagcgtgggtgtacggcgcgctggtttcaccggccttgatgGTGACCCTGAGCAACAATGCCCAGGTCAcc < 1:373787‑M1/30‑1 (MQ=255) cctgagcagcgtgggtgtacggcgcgctggtttcaccggccttgatgGTGACCCTGAGCAACAATGCCCAGGTCAcc > 2:373787‑M1/48‑77 (MQ=255) aaCCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAAc > 2:588430/1‑150 (MQ=31) tcagggtCACGACCAGGTCGTAAGGCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGt > 1:22433/7‑150 (MQ=11) aCGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCa > 1:246049/1‑150 (MQ=34) gACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGACCAGATCAGCCTGGGAATCAACTCGGCGGTGGAcaccacg > 1:641913/1‑149 (MQ=255) | CGAGCCTGGTACCCCAGGCAACCCGGGCGGCAGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACT > NC_002947/203911‑204199 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |