New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3233587 = | 11 (0.390) | 4 (0.150) | 4/230 | NT | 26.4% | coding (732/948 nt) | GbpR | galactose‑binding protein regulator |
? | NC_002947 | 3233624 = | 12 (0.460) | coding (769/948 nt) | GbpR | galactose‑binding protein regulator |
CATCCCTTGGCGACAGCCACAGGGCTGCAGTTGGCCGACCTGGTGAGCTTGACGTGGATCTTGCACCCCATCGGCAGCCCGATGCGCCGTCGCGTCGAAAGCGCATTGCAGGCCGGCGGCATGGTGCAGTCGCTGGATATCGTCGAAACCGCTTCGATCCTGGCGACCACTGCCATGCTCGAAGCGTCCGAAATGATTGCGGTGGTGCCCAATGACGTGGCCCAGCATTATGCCCGCTATGGCATGGTCGCCGTCCTGCCGGTGGAGTTGC > NC_002947/3233438‑3233708 | tcaagggcaaccgagttgggccgcgagcgcagggtcagcacgccgaggttggccatcgccagtggcaactccaccggcaggacggcgaccatgccatagcgggcataatgctgggccacgtcattgggcaccaccgcaatcatttcggac < 1:595116‑M1/1‑1 (MQ=255) ccTTGGCGACAGCCACAGGGCTGCAGTTGGCCGACCTGGTGAGCTTGACGTGGATCTTGCACCCCATCGGCAGCCCGATGCGCCGTCGCGTCGAAAGCGCATTGCAGGCCGGCGGCATGGTGCAGTCGCTGGATATCGTCGAAACCGCtt < 2:320959/150‑1 (MQ=255) gTGGATCTTGCACCCCATCGGCAGCCCGATGCGCCGTCGCGTCGAAAGCGCATTGCAGGCCGGCGGCATGGTGCAGTCGCTGGATATCGTCGAAACAGCTTCGATCCTGGCGACCACTGCCATGCTCGAAGCGTCCGAAATGATTGCggt > 2:296953/1‑150 (MQ=255) gcaactccaccggcaggacggcgaccgtgccatagcgggcataatgcttggccacgtcattgggcaccaccgcaatcatttcggaCGCTTCGATCCTGGCGACCACTGCCATGCTCGAAGCGTCCGAAATGATTGCggtggt > 1:365226‑M1/86‑142 (MQ=255) aCCCCATCGGCAGCCCGATGCGCCGTCGCGTCGAAAGCGCATTGCAGGCCGGCGGCATGGTGCAGTCGCTGGATATCGTCGAAACCGCTTCGATCCTGGCGACAACTGCCATGCTCGATGCGTCCGAAATTATTTCGGGGGGGCCCAGTg > 2:607600/1‑150 (MQ=255) aTCGGCAGCCCGATGCGCCGTCGCGTCGAAAGCGCATTGCAGGCCGGCGGCATGGTGCAGTCGCTGGATATCGTCGAAACCGCTTCGATCCTGGCGACCACTGCCATGCTCGAAGCGTCCGAAATGATTGCGGTGGTGCCCAATGACGTg > 2:363861/1‑150 (MQ=255) ccggcaggacggcgaccatgccatagcgggcataatgctgggccacgtcattgggcaccaccgcaatcatttcggaCGCTTCGATCCTGGCGACCACTGCCATGCTCGaa < 1:282881‑M1/34‑1 (MQ=255) ccggcaggacggcgaccatgccatagcgggcataatgctgggccacgtcattgggcaccaccgcaatcatttcggaCGCTTCGATCCTGGCGACCACTGCCATGCTCGaa > 2:282881‑M1/77‑110 (MQ=255) aGCCCGATGCGCCGTCGCGTCGAAAGCGCATTGCAGGCCGGCGGCATGGTGCAGTCGCTGGATATCGTCGAAACCGCTTCGATCCTGGCGACCACTGCCATGCTCGAAGCGTCCGAAATGATTGCGGTGGTGCCCAATGACGTGGCCCAg > 1:427926/1‑150 (MQ=255) cccGATGCGCCGTCGCGTCGAAAGCGCATTGCAGGCCGGCGGCATGGTGCAGTCGCTGGATATCGTCGAAACCGCTTCGATCCTGGCGACCACTGCCATGCTCGAAGCGTCCGAAATGATTGCGGTGGTGCCCAATGACGTGGCCCAGCa > 1:110100/1‑150 (MQ=255) gcCGTCGCGTCGAAAGCGCATTGCAGGCCGGCGGCATGGTGCAGTCGCTGGATATCGTCGAAACCGCTTCGATCCTGGCGACCACTGCCATGCTCGAAGCGTCCGAAATGATTGCGGTGGTGCCCAATGACGTGGCCCAGCATTATGccc < 2:427926/150‑1 (MQ=255) gcgcATTGCAGGCCGGCGGCATGGTGCAGTCGCTGGATATCGTCGAAACCGCCTCGATCCTGGCGAc < 2:191724/67‑1 (MQ=255) gcgcATTGCAGGCCGGCGGCATGGTGCAGTCGCTGGATATCGTCGAAACCGCCTCGATCCTGGCGAc > 1:191724/1‑67 (MQ=255) tGGTGCAGTCGCTGGATATCGTCGAAACCGCTTCGATCCTGGCGACCACTGCCATGCTCGAAGCGTCCGAAATGATTGCGGTGGTGCCCAATGACGTGGCCCAGCATTATGCCCGCTATGGCATGGTCGCCGTCCTGCCGGTGGAGTTGc < 2:110100/150‑1 (MQ=255) accaccgcaatcatttcggaCGCTTCGAGCATGGCAGTGGTCGCCAGGATCGAAGCGTCCGAAATGATTGCGGTGGTGCCCAATGACGTGGCCAAGCATTATGCCCGCTATGGCACGGTCGCCGTCCTGCCGGTGGAGTTGc > 2:365226‑M1/21‑142 (MQ=255) gtcgAAACCGCTTCGATCCTGGCGACCACTGCCATGCTCGAAGCGTCCGAAATGATTGCggt > 2:108141/1‑62 (MQ=255) gtcgAAACCGCTTCGATCCTGGCGACCACTGCCATGCTCGAAGCGTCCGAAATGATTGCggt < 1:108141/62‑1 (MQ=255) aCCGCTTCGATCCTGGCGACCACTGCCATGCTCGAAGCGTCCGAAATGATTGCggtg > 1:438202/1‑57 (MQ=255) aCCGCTTCGATCCTGGCGACCACTGCCATGCTCGAAGCGTCCGAAATGATTGCggtg < 2:438202/57‑1 (MQ=255) | CATCCCTTGGCGACAGCCACAGGGCTGCAGTTGGCCGACCTGGTGAGCTTGACGTGGATCTTGCACCCCATCGGCAGCCCGATGCGCCGTCGCGTCGAAAGCGCATTGCAGGCCGGCGGCATGGTGCAGTCGCTGGATATCGTCGAAACCGCTTCGATCCTGGCGACCACTGCCATGCTCGAAGCGTCCGAAATGATTGCGGTGGTGCCCAATGACGTGGCCCAGCATTATGCCCGCTATGGCATGGTCGCCGTCCTGCCGGTGGAGTTGC > NC_002947/3233438‑3233708 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |