New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 681274 = | 24 (0.850) | 7 (0.300) | 6/204 | NT | 27.5% | intergenic (+11/+58) | PP_0583/PP_0584 | AraC family transcriptional regulator/methyl‑accepting chemotaxis transducer |
? | NC_002947 | 681322 = | 17 (0.730) | intergenic (+59/+10) | PP_0583/PP_0584 | AraC family transcriptional regulator/methyl‑accepting chemotaxis transducer |
GGCGCTGGGGTGTGGGTATGACTCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGGCCACCAACTGCGCATCCCCGTGAATCTGGCTGATGTGCCGGTTGATG > NC_002947/681173‑681470 | ggcgCTGGGGTGTGGGTATGACTCCACCTCGGCCTACGTGGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTCTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGc < 2:623621/150‑1 (MQ=255) tgtgGGTATGACTCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGcatcat > 1:66961/1‑150 (MQ=255) aTGACTCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGc < 1:597733/150‑1 (MQ=255) gACTCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGATATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCgg > 2:223030/1‑150 (MQ=255) tCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAAc > 2:463226/1‑150 (MQ=255) ggCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCAc < 1:136124/150‑1 (MQ=255) tACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGc < 2:377326/150‑1 (MQ=255) aaGCAACTATTTGGCGCTCAACCGTGGTAATTTAAGGTCTGATTTTCGCTTCCCTGTGCCGGCCCTTTCGCGGCCGTATCCGCGAAAGGGCCGGAACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTg < 1:260737/150‑1 (MQ=255) agcagcTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTgg > 2:600527/1‑150 (MQ=255) cGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCgg > 1:471403/1‑150 (MQ=255) gggggTAGTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGa > 2:219280/1‑150 (MQ=255) ggAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCATGCTCTCGGAGTc < 2:66961/150‑1 (MQ=255) gAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCAGCGATAGGGCCGGCCCAGGCCATGCATCATCAGGGGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAACACCGCCGGGCTCTCGGGGTcc > 2:467599/1‑150 (MQ=255) aaGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGgcgc > 2:566048/1‑150 (MQ=255) aaGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGgcgc < 1:600527/150‑1 (MQ=255) ttttCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGc > 1:442348/1‑59 (MQ=255) ttttCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGc < 2:442348/59‑1 (MQ=255) gTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGc > 2:192768/1‑150 (MQ=255) tttCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGc > 1:141637/1‑95 (MQ=255) tttCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGc < 2:141637/95‑1 (MQ=255) GTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGGcca > 1:566048‑M1/1‑150 (MQ=255) GCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCATCAGCGTATCCAGCTCATTGGa > 2:437319‑M1/1‑91 (MQ=255) GCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCATCAGCGTATCCAGCTCATTGGa < 1:437319‑M1/91‑1 (MQ=255) CCCTTTCGCGGGGTTAGCCACGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGGCCACCAACTg > 2:494761‑M1/1‑150 (MQ=255) cctttcgcggataaccccgcgaaagggccggcacaggCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCg < 2:269856‑M2/36‑1 (MQ=255) cctttcgcggataaccccgcgaaagggccggcacaggCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCg > 1:269856‑M2/38‑73 (MQ=255) cctttcgcggataaccccgcgaaagggccggcacaggCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCgg < 1:436341‑M2/102‑1 (MQ=255) cctttcgcggataaccccgcgaaagggccggcacaggCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCgg > 2:436341‑M2/38‑139 (MQ=255) CCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGGCCACCAACTgc > 1:192768‑M1/1‑150 (MQ=255) CCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGGCCACCAACTgc < 2:593665‑M1/150‑1 (MQ=255) ctttcgcggataaccccgcgaaagggccggcacaggCCATGCATCATCAGGTGCGGAACCTGCGCACCa > 1:231982‑M2/37‑69 (MQ=255) ctttcgcggataaccccgcgaaagggccggcacaggCCATGCATCATCAGGTGCGGAACCTGCGCACCa < 2:231982‑M2/33‑1 (MQ=255) tttcgcggataaccccgcgaaagggccggcacaggCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGGCCACCAACTgcgc > 2:692769‑M2/36‑150 (MQ=255) GCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGGCCACCAACTGCGCATcc < 1:206919‑M1/150‑1 (MQ=255) CGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGGCCACCAACTGCGCATccc > 1:593665‑M1/1‑150 (MQ=255) ggtgacccgcaaaagggccggcacaggCCATGCATCATCAGGTGCGGAACCTGCGCACCCGCGTATCCTGCTCCTTGACCATCCCGCCCAAGCTCGCGTAGTCCTGGCTCGCCGCCTGGGCCAGCTCGGCCACCAACTGCGCATCCCCGt < 1:467599‑M2/123‑1 (MQ=255) cgaaagggccggcacaggCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGGCCACCAACTGCGCATCCCCGTGAATCTGGc < 2:471403‑M2/132‑1 (MQ=255) cgaaagggccggcacaggCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGGCCACCAACTGCGCATCCCCGTGAATCTGGc < 2:206919‑M2/132‑1 (MQ=255) gggcctgcacaggCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGGCCACCAACTGCGCATCCCCGTGAATCTGGCTGAtg > 2:374104‑M2/14‑150 (MQ=255) cacaggCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTgg < 1:499223‑M2/92‑1 (MQ=255) cacaggCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTgg > 2:499223‑M2/7‑98 (MQ=255) aggCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGGCCAGCAACTGCGCATCCCCGTGAATCTGGCTGATGTGCCGGTTGa > 2:512076‑M2/4‑150 (MQ=255) gCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGGCCACCAACTgc < 2:154652‑M2/113‑1 (MQ=255) gCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTAGGCCACCAACTGCGCATCCCCGTGAATCTGGCTGATGTGCCGGTTGATg > 1:81278‑M2/2‑150 (MQ=255) gCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGGCCTGGCGCGCCGCCTGGGCCAGCTCGGCCACCAACTgc > 1:154652‑M2/2‑114 (MQ=255) | GGCGCTGGGGTGTGGGTATGACTCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGGCCACCAACTGCGCATCCCCGTGAATCTGGCTGATGTGCCGGTTGATG > NC_002947/681173‑681470 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |