New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 738855 = | 39 (1.380) | 4 (0.140) | 4/242 | NT | 10.1% | coding (564/867 nt) | pilD | leader peptidase/N‑methyltransferase |
? | NC_002947 | 738889 = | 33 (1.190) | coding (530/867 nt) | pilD | leader peptidase/N‑methyltransferase |
CCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCATCGATCAGGCTCAGCGCCAGCAGGCACCAGGTCAGCGGCAGAGCCACCAACGCCTCTAC > NC_002947/738749‑739034 | ccccccACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGa > 1:8343/1‑150 (MQ=255) gCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAg < 2:677635/150‑1 (MQ=255) gcgcCATCAGCTTGAAATCGCCATACAACATGCAATACTTCCCGGTAACTAGCGTGAACACCCAGTACAGCGTCCACAGGCTGATGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGACACGGGTATTGACGa > 1:428777/1‑150 (MQ=255) cgcCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACAt > 2:360611/1‑128 (MQ=255) cgcCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACAt < 1:360611/128‑1 (MQ=255) cgcCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGAt < 1:83710/150‑1 (MQ=255) ccATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCa < 2:427055/150‑1 (MQ=255) ccaccagctgctgccggatgtgctggtgctgccgaccatgtggctagggctgatcgtcaatgcctttggcatccatgtgccCCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGAt < 1:330473‑M1/45‑1 (MQ=255) ccaccagctgctgccggatgtgctggtgctgccgaccatgtggctagggctgatcgtcaatgcctttggcatccatgtgccCCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGAt > 2:330473‑M1/82‑126 (MQ=255) cAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGccc < 2:598116/150‑1 (MQ=255) gCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTa < 1:286676/150‑1 (MQ=255) gCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTa < 2:203219/150‑1 (MQ=255) ccATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATAAGCCCTAGCCACATGGTc > 1:554649/1‑150 (MQ=255) ccATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGgcagca > 2:346277/1‑150 (MQ=255) gctggtgctgccgaccatgtggctagggctgatcgtcaatgcctttggcatccatgtgcccctggccgacgcactgtggggcgcagtggccgggGGCACATGGATGCCAAAGGCATTGACGa > 2:381794‑M2/95‑122 (MQ=255) gctggtgctgccgaccatgtggctagggctgatcgtcaatgcctttggcatccatgtgcccctggccgacgcactgtggggcgcagtggccgggGGCACATGGATGCCAAAGGCATTGACGa < 1:381794‑M2/28‑1 (MQ=255) ccttccttGGCGGTGGCCAGCCTGAACACCCAGGACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGcagcaccagc > 2:10178/1‑150 (MQ=255) ttccttGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGcggcaccagcgc > 1:184199/1‑148 (MQ=255) ttGCCGGTGACCAGCCTGGACCCCCAGTACACCGGCCAGAGGCTGAGGTCCCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGAGGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCCCCAGCACATcc < 1:375958/150‑1 (MQ=255) aCCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCagcagc > 2:693801/1‑150 (MQ=255) ccAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCt > 1:343170/1‑150 (MQ=255) aGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCtgg > 1:643377/1‑150 (MQ=255) gCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCtggt > 2:378168/1‑150 (MQ=255) ccTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCtggtg < 1:378168/150‑1 (MQ=255) tGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCa > 2:622361/1‑99 (MQ=255) tGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCa < 1:622361/99‑1 (MQ=255) aaCACCTAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTcc < 1:517349/150‑1 (MQ=255) cacCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGc > 2:655914/1‑150 (MQ=255) tcgtcaatgcctttggcatccatgtgccCCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGcagcaccagc < 1:381794‑M1/94‑1 (MQ=255) tcgtcaatgcctttggcatccatgtgccCCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGcagcaccagc > 2:381794‑M1/29‑122 (MQ=255) nacacCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCATCGATc > 2:391023/2‑150 (MQ=255) cacCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTTGTCAGCCTCAGCACGTCCGGGGGCAGCTGGTGGTCGGCATCGAGCAg < 2:8343/150‑1 (MQ=255) cacCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCATCGATCAg > 2:2807/1‑150 (MQ=255) acCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATACGGCAGCAGCTGGTGGTCCGCATCGATCacg > 1:105903/1‑148 (MQ=255) atccatgtgcccctggccgacgcactgtggggcgcagtggccgggGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCtggtgg > 2:330473‑M2/46‑126 (MQ=255) atccatgtgcccctggccgacgcactgtggggcgcagtggccgggGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCtggtgg < 1:330473‑M2/81‑1 (MQ=255) ggCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCATCGATCAGGCTCAGCGCca < 2:343170/150‑1 (MQ=255) tGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCATCGATCAGGCTCAGCGCcagca < 1:346277/150‑1 (MQ=255) CCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCATCGATCAGGCTCAGCGCCAGCAGGCACCAg < 2:184319‑M1/150‑1 (MQ=255) cGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCATCGATCAGGCTCAGCGCCAGCAGGCACCAgg > 1:338844/1‑150 (MQ=255) cgcCCCACAGTGCGTCGGCCAGAGGCACCTGGATGAAAAAGGAATTGATGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACTTCCGGCAGCAACTGGTGGTACGCATCGATCAGGCTCACCGCCAGCAGGAACAAGGTCAGCGGCa < 2:105903/150‑1 (MQ=255) gCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCATCGATCAGGCTCAGCGCCAGCAGGCACCAGGTCAGCGGCAGAGCCACCAAc < 2:643377/150‑1 (MQ=255) ccAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCtg > 1:638826/1‑82 (MQ=255) ccAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCtg < 2:638826/82‑1 (MQ=255) ccAGGGGCACATGGATGCCAAAGGCATTGACGATAAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCATCGATCAGGCTCAGCGCCAGCAGGCACCAGGTCAGCGGCAGAGCCACCAACGCCTCTa < 2:554649/150‑1 (MQ=255) cAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCATCGATCAGGCTCAGCGCCAGCAGGCACCAGGTCAGCGGCAGAGCCACCAACGCCTCTAc > 2:531038/1‑150 (MQ=255) | CCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCATCGATCAGGCTCAGCGCCAGCAGGCACCAGGTCAGCGGCAGAGCCACCAACGCCTCTAC > NC_002947/738749‑739034 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |