New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4150085 | 19 (0.670) | 6 (0.250) | 5/210 | NT | 26.5% | intergenic (+40/‑357) | PP_3654/PP_3655 | leucine‑responsive regulatory protein/cytosine/purine/uracil/thiamine/allantoin permease family protein |
? | NC_002947 | = 4150116 | 17 (0.710) | intergenic (+71/‑326) | PP_3654/PP_3655 | leucine‑responsive regulatory protein/cytosine/purine/uracil/thiamine/allantoin permease family protein |
TTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCACCGTGATCCGGTTGCCACCCCCGCCGCCCCTCTACCCCAAGGCCTTCAGCCAGCTG > NC_002947/4149972‑4150252 | ttCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAgcggg > 1:527406‑M2/1‑145 (MQ=255) aCGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAgcgggtttacccgcgaag < 1:379602‑M2/150‑19 (MQ=255) ttGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCCTGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAGCGGGTTTACCCGCGAAGAggc < 1:97685/150‑1 (MQ=255) tGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAGCGGGTTTACCCGCGAAGAggcc < 1:159184/150‑1 (MQ=255) cTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCa > 2:166708/1‑150 (MQ=255) gatgaAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAGCGGGTTTACCCGCGAAGAGGACGGCCCAGGCAACCttt < 2:748461/150‑1 (MQ=255) gaaggaagTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCAt > 1:267029/1‑150 (MQ=255) gaaggaagTGATCCAGGATCGGCTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGCTAACCCCGCGCCTTCAAAGGTGACGTAGCCCGTCGCACGAGCGGGTTTACCCGCGACGAGGCCGGCCCAGTCAACCTTTCAt > 2:86600/1‑150 (MQ=255) gaagTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGc < 2:267029/150‑1 (MQ=255) gaagTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGc < 1:689842/150‑1 (MQ=255) aagTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGcc < 2:646890/150‑1 (MQ=255) gttttcagggcagatgaaaggttgcctgggccggcctCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAGCggg < 1:272906‑M1/54‑1 (MQ=255) gttttcagggcagatgaaaggttgcctgggccggcctCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAGCggg > 2:272906‑M1/38‑91 (MQ=255) tGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACATCg < 1:532702/150‑1 (MQ=255) cTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAACCCCGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACATCGCa < 1:592848/150‑1 (MQ=255) tGTAACTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAACCCCGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACATCGCACCAAccc < 2:157608/150‑1 (MQ=255) aGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACATCGCACCAACCCAGc < 2:540837/150‑1 (MQ=255) cccGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAgcgggtttacccgcgaaggggccggcacaagaggaaacagctacatggggagcaaccgatcctggatcacttccttcatcaccaaggtcgagctcaagcgtttcacattgggaa < 1:486258‑M2/150‑115 (MQ=255) CCCGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGc < 2:126846‑M1/82‑1 (MQ=255) CCCGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGc > 1:126846‑M1/1‑82 (MQ=255) ccGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAgcgggtttacccgcgaaggggccggcacaagaggaaacagctacatggggagcaaccgatcctggatcacttccttcatcaccaaggtcgagctcaagcgtttcacattgggaat < 2:344218‑M2/150‑116 (MQ=255) ccGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAgcgggtttacccgcgaaggggccggcacaagaggaaacagctacatgggga < 2:457214‑M2/86‑52 (MQ=255) ccGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAgcgggtttacccgcgaaggggccggcacaagaggaaacagctacatgggga > 1:457214‑M2/1‑35 (MQ=255) gTGACGTAGCCCGTCGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCACCGTGATCCGGTTGCCACCCCCGCCGCCCCTCTACCCCAAGGCCTTcag > 1:608749/1‑150 (MQ=255) tGACGTAGCCCGTCGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCACCGTGATCCGGTTGCCACCCCCGCCGCCCCTCTACCCCAAGGCCTTcagc < 2:379602/150‑1 (MQ=255) cGTAGCCCGTCGCAGGAgcgggtttacccgcgaaggggccggcacaagaggaaacagctacatggggagcaaccgatcctggatcacttccttcatcaccaaggtcgagctcaagcgtttcacattgggaatactggtcaggtgctcgtc > 1:344218‑M2/1‑17 (MQ=255) gTAGCCCGTCGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACgcgc > 1:31786/1‑75 (MQ=255) gTAGCCCGTCGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACgcgc < 2:31786/75‑1 (MQ=255) aGCCCGTCGCAGGAgcgggtttacccgcgaaggggccggcacaagaggaaacagctacatggggagcaaccgatcctggatcacttccttcatcaccaaggtcgagctcaagcgtttcacattgggaatactggtcaggtgctcgtcata > 2:486258‑M2/1‑14 (MQ=255) gTCGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAAcgcg < 2:323013/67‑1 (MQ=255) gTCGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAAcgcg > 1:323013/1‑67 (MQ=255) | TTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCACCGTGATCCGGTTGCCACCCCCGCCGCCCCTCTACCCCAAGGCCTTCAGCCAGCTG > NC_002947/4149972‑4150252 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |