New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5336775 | 32 (1.140) | 5 (0.180) | 5/238 | NT | 12.5% | coding (177/1443 nt) | PP_4696 | nitrogen regulation protein NR(I) |
? | NC_002947 | = 5336801 | 39 (1.430) | coding (203/1443 nt) | PP_4696 | nitrogen regulation protein NR(I) |
TCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGATGCTGCAGGCAGTAGCGCGTATTCTGCGTG > NC_002947/5336652‑5336941 | tCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGAT‑GATCAAGCTCGGC‑Ca < 1:480638/150‑1 (MQ=255) tCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCAGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTGAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GAGCAAGCTCGGC‑Ca > 1:717348/1‑150 (MQ=255) cGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAg > 2:452610‑M2/1‑149 (MQ=255) gAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCTGG‑CCGAGCTTGATCA‑GCTCGGTGCCgggcgcgccgggcag > 2:618785‑M2/1‑135 (MQ=255) gTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCAt > 2:158876/1‑150 (MQ=255) ccAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGt > 2:76742/1‑138 (MQ=255) ccAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGt < 1:76742/138‑1 (MQ=255) ccAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGAc > 2:552997/1‑150 (MQ=255) aGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCa < 2:63459/150‑1 (MQ=255) ggTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAg < 1:158876/150‑1 (MQ=255) gTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGt < 2:671443/150‑1 (MQ=255) tCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGtt > 1:163733/1‑150 (MQ=255) gCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACg > 2:136774/1‑150 (MQ=255) cAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAgg < 2:16905‑M2/94‑3 (MQ=255) cAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAgg > 1:16905‑M2/1‑92 (MQ=255) cAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGa < 1:202177/115‑1 (MQ=255) cAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGa > 2:202177/1‑115 (MQ=255) ttCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGTACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATg > 1:643155/1‑150 (MQ=255) ttCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGc < 2:234008/97‑1 (MQ=255) ttCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGc > 1:234008/1‑97 (MQ=255) ttCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATg > 1:122498/1‑150 (MQ=255) gCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTg > 2:68052/1‑150 (MQ=255) gCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTg < 2:472366/150‑1 (MQ=255) aCTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTAAACTAGATGAAAATGGGCGCGGTGGAc < 2:566652/150‑1 (MQ=255) tttCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTa > 2:125273/1‑150 (MQ=255) gACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCTGTGGACTCGATGAAAATGGGCGCGGTGGACTACATc < 2:520298/150‑1 (MQ=255) tCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGc > 1:599838/1‑150 (MQ=255) gCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTg < 1:237440/128‑1 (MQ=255) gCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTg > 2:237440/1‑128 (MQ=255) gACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGAc < 1:68052/150‑1 (MQ=255) ccTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAgggcaccccgggcaggcgcaggtcgctgacgatgaggtcgaaagtggcaatgctgaa > 2:2522‑M2/1‑42 (MQ=255) ccTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAgggcaccccgggcaggcgcaggtcgctgacgatgaggtcgaaagtggcaatgctgaa < 1:2522‑M2/99‑58 (MQ=255) tGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACgaga < 1:237122/150‑1 (MQ=255) gcCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAgggcgcgccgggcaggcgcaggtcgctgacgatgaggtcgaaagtggcaatgctgaagcgttcctgggcttcctgcaccgagccggcctcgctgacc < 2:736169‑M2/127‑98 (MQ=255) gcCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAgggcgcgccgggcaggcgcaggtcgctgacgatgaggtcgaaagtggcaatgctgaagcgttcctgggcttcctgcaccgagccggcctcgctgacc > 1:736169‑M2/1‑30 (MQ=255) cccGGCACCGAACT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGATGCTgcaggca > 2:559253/1‑150 (MQ=255) aCCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTg < 2:193275/99‑1 (MQ=255) aCCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTg > 1:193275/1‑99 (MQ=255) ccGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGATGCTGCAGGCAGTAgcgc < 2:544519/150‑1 (MQ=255) ccGAGCT‑GATCAAGCTCGGC‑CAGGGCAAACCGGTGCTGCTCCTGACCAGTGACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACTACGTGATGCTGCAGGCAGTAgcgc < 2:163733/150‑1 (MQ=255) cGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGATGCTGCAGGCAGTAGcgcg < 2:717348/150‑1 (MQ=255) aGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGATGCTGCAGGCAGTAGCGCGTa < 2:611107/150‑1 (MQ=255) aTCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATc > 1:399315/1‑99 (MQ=255) aTCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATc < 2:399315/99‑1 (MQ=255) cAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTg > 2:6354/1‑64 (MQ=255) cAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTg < 1:6354/64‑1 (MQ=255) aGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGATGCTGCAGGCAGTAGCGCGTATTCTGCGTg > 2:445822/1‑150 (MQ=255) tCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTg < 1:533444/59‑1 (MQ=255) tCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTg > 2:533444/1‑59 (MQ=255) | TCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGATGCTGCAGGCAGTAGCGCGTATTCTGCGTG > NC_002947/5336652‑5336941 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |