New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5593015 = | 46 (1.630) | 7 (0.250) | 7/242 | NT | 13.7% | coding (1090/1284 nt) | PP_4921 | NCS1 family transporter |
? | NC_002947 | 5593038 = | 43 (1.550) | coding (1067/1284 nt) | PP_4921 | NCS1 family transporter |
ATGCGGGCAGGGTGGCGCCCAGTTCGGGCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCAACGCCAGGTGCTCGACCTTCAGCGGTAGCAGCACAC > NC_002947/5592889‑5593185 | cgagcacctggcgttggccatcggcgtgttgtgcaccctgatcgccctgttggcgccactggcacagtacgaaaacttcctgttgctgatcggttcggtgttcgcaccgctgttcggcgtggtgctGACGGACCACGTA‑GTGGTCCATCa > 2:149551‑M1/127‑150 (MQ=255) cGGGCAGGGTGGCGCCCAGTTCGGGCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGca < 1:243957/150‑1 (MQ=255) ggTGGCGCCCAGTTCGGGCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGCTCCATCAGCACCACGcc > 2:8650/1‑150 (MQ=255) ggCGCCCAGTTCGGGCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGaa > 2:411036/1‑150 (MQ=255) ggCGCCCAGTTCGGGCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGaa < 2:670936/150‑1 (MQ=255) aGTTCGGGCGCCTTGGCGGCAATCAGGTGATAGGCCACCCCTTCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGt < 1:196102/150‑1 (MQ=255) ttCGGGCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGc < 2:140242/150‑1 (MQ=255) gggCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGaa < 2:1039/150‑1 (MQ=255) gggCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGaa > 2:726135/1‑150 (MQ=255) gggCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGaa < 2:21067/150‑1 (MQ=255) gcCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACacc > 1:100166/1‑150 (MQ=255) ggcAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGAt > 2:118785/1‑150 (MQ=255) aaaTCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCa < 2:59276/149‑1 (MQ=255) caccacTCCGGTACACGAGGCCACCGACGCCCGCCAGTGCAAGCCATGGACCTGGGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTc < 2:421327/150‑1 (MQ=255) caccacTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTc > 2:141547/1‑150 (MQ=255) caccacTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTc < 2:749687/150‑1 (MQ=255) tCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGc < 2:178712/98‑1 (MQ=255) tCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGc > 1:178712/1‑98 (MQ=255) tCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGaa < 1:227315/102‑1 (MQ=255) tCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGaa > 2:227315/1‑102 (MQ=255) cctgTAAACCAGGCCACCAACTCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCAAACACCGAACCGATCAGCAACCGGAAGTTTTCGTACtgt < 2:457435/147‑1 (MQ=255) cGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACtgtg > 1:44707/1‑150 (MQ=255) gTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGcc > 2:436360/1‑150 (MQ=255) atccAGGCCTCCCACCCCTTCCAGTGCAAGCCATTGACCTGTCATGCGCTTCGGCGTCGACGGACCACGTA‑GTGGTCCATCACCACCACGTCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGt < 1:457650/148‑1 (MQ=255) aaCCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGt < 1:431315/150‑1 (MQ=255) cgaaaacttcctgttgctgatcggttcggtgttcgcaccgctgttcggcgtggtgctgacggaccacgtagtggtccatcAGcacc > 1:517092‑M2/81‑86 (MQ=255) cgaaaacttcctgttgctgatcggttcggtgttcgcaccgctgttcggcgtggtgctgacggaccacgtagtggtccatcAGcacc < 2:517092‑M2/6‑1 (MQ=255) aGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGgcg > 2:389799/1‑150 (MQ=255) aGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGgcg > 1:166346/1‑150 (MQ=255) accaACGCCTGCCAGTGCAAGCCGTTGACCTGTGCTGGCAGCCAGCGTAGACGAACAACGTA‑GTGGTCCATCAGAACCACGCCGCACAGCGGTGCGAACACCGAACCGATCAGCAACAGCAAGCTCTCGTAATATGCCAGTAGCGCCAAc > 2:95872/1‑150 (MQ=255) ccaACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACa < 1:615042/150‑1 (MQ=255) cAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAgg < 2:100166/150‑1 (MQ=255) atcggttcggtgttcgcaccgctgttcggcgtggtgctgacggaccacgtagtggtccatcAGCACCACGCCGAACAGCGGTGc < 1:343429‑M2/23‑1 (MQ=255) atcggttcggtgttcgcaccgctgttcggcgtggtgctgacggaccacgtagtggtccatcAGCACCACGCCGAACAGCGGTGc > 2:343429‑M2/62‑84 (MQ=255) cAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTg < 1:337254/148‑1 (MQ=255) cAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTg > 2:337254/1‑148 (MQ=255) aGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGcc > 1:179278/1‑128 (MQ=255) aGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGcc < 2:179278/128‑1 (MQ=255) gCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCaa < 2:120096/96‑1 (MQ=255) gCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCaa > 1:120096/1‑96 (MQ=255) gcaccgctgttcggcgtggtgctGATGGACCACTAC‑GTGGTCCGTCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGAt > 2:343429‑M1/24‑84 (MQ=255) gcaccgctgttcggcgtggtgctGATGGACCACTAC‑GTGGTCCGTCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGAt < 1:343429‑M1/61‑1 (MQ=255) tgCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGc > 1:425688/1‑150 (MQ=255) tGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCaa < 1:118785/150‑1 (MQ=255) cGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCAACGCCAgg < 1:411036/150‑1 (MQ=255) ggtgctGATGGACCAC‑TACGTGGTCCGTCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCg > 1:517092‑M1/7‑86 (MQ=255) ggtgctGATGGACCAC‑TACGTGGTCCGTCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCg < 2:517092‑M1/80‑1 (MQ=255) tgatggaccactacgtggtccgtcAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCAACGCCAGGTGCTCg > 2:149551‑M2/25‑150 (MQ=255) gatggaccactacgtggtccgtcAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATg > 1:66670‑M2/24‑131 (MQ=255) gatggaccactacgtggtccgtcAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATg < 2:66670‑M2/108‑1 (MQ=255) gACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCAACGCCAGGTGCTCGACCtt > 2:684505/1‑150 (MQ=255) aCCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCAACGCCAGGTGCTCGAcc < 1:26314/147‑1 (MQ=255) aCCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCAACGCCAGGTGCTCGAcc > 2:26314/1‑147 (MQ=255) ccACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCAACGCCAGGTGCTCGACCTTCa < 1:8650/150‑1 (MQ=255) cACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCAACGCCAGGTGCTCGACCTTCAg < 2:83155/150‑1 (MQ=255) ggTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCAACGCCAGGTGCTCGACCTTCAGCGGTagca < 1:141547/150‑1 (MQ=255) tCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCAACGCCAGGTGCTCGACCTTCAGCGGTagcagc > 1:668650/1‑150 (MQ=255) aTCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCAACGCCAGGTGCTCGACCTTCAGCGGTAGCAGcaca > 1:15576/1‑150 (MQ=255) aTCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCAACGCCAGGTGCTCGACCTTCAGCGGTAGCAGcaca > 1:120709/1‑150 (MQ=255) tcAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCAACGCCAGGTGCTCGACCTTCAGCGGTAGCAGCacac < 2:668650‑M2/148‑1 (MQ=255) | ATGCGGGCAGGGTGGCGCCCAGTTCGGGCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCAACGCCAGGTGCTCGACCTTCAGCGGTAGCAGCACAC > NC_002947/5592889‑5593185 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |