Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,498,379 | C→A | 13.7% | A100D (GCC→GAC) | trpS → | tryptophan‑‑tRNA ligase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,498,379 | 0 | C | A | 13.7% | 78.5 / 2.9 | 30 | A100D (GCC→GAC) | trpS | tryptophan‑‑tRNA ligase |
Reads supporting (aligned to +/- strand): ref base C (11/14); new base A (2/2); total (13/17) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 |
ACCCGCTGCGCATCCAGCGCTCGCGCCTGGAAATCGCCGCCACCTGGCTGGCCGGTGGCCTGGACCCGGACAAGGTGACCTTCTATCGCCAGTCCGACATCCCGGAAATCCCCGAGCTGACCTGGCTGCTGACCTGCGTTGCCGCCAAAGGCCTGCTGAACCGCGCGCATGCCTACAAGGCCTCGGTGGACAAGAACGTCGAGAACGGCGAAGACCCGGACGCCGGCGTGACGATGGGCCTGTTCAGCTACCCGGTGCTGATGGCCGCCGATATCCTGATGTTCAAC > NC_002947/1498238‑1498524 | acCCGCTGCGCATCCAGCGCTCGCGCCTGGAAATCGCCGCCACCTGGCTGGCCGGTGGCCTGGACCCGGACAAGGTGACCTTCTATCGCCAGTCCGACATCCCGGAAATCCCCGAGCTGACCTGGCTGCTGACCTGCGTTGCCGCCAAAg < 2:46941/150‑1 (MQ=255) cgcATCCAGCGCTCGCGCCTGGAAATCGCCGCCACCTGGCTGGCCGGTGGCCTGGACCCGGACAAGGTGACCTTCTATCGCCAGTCCGACATCCCGGAAATCCCCGAGCTGACCTGGCTGCTGACCTGCGTTGCCGCCAAAGGCctgctg < 2:635989/150‑1 (MQ=255) ccAGCGCTCGCGCCTGGAAATCGCCGCCACCTGGCTGGCCGGTGGCCTGGACCCGGACAAGGTGACCTTCTATCGCCAGTCCGACATCCCGGAAATCCCCGAGCTGACCTGGCTGCTGACCTGCGTTGCCGCCAAAGGCCTGCTGaa > 2:33447/1‑147 (MQ=255) ccAGCGCTCGCGCCTGGAAATCGCCGCCACCTGGCTGGCCGGTGGCCTGGACCCGGACAAGGTGACCTTCTATCGCCAGTCCGACATCCCGGAAATCCCCGAGCTGACCTGGCTGCTGACCTGCGTTGCCGCCAAAGGCCTGCTGaa < 1:33447/147‑1 (MQ=255) gcgcCTGGAAATCGCCGCCACCTGGCTGGCCGGTGGCCTGGACCCGGACAAGGTGACCTTCTATCGCCAGTCCGACATCCCGGAAATCCCCGAGCTGACCTGGCTGCTGACCTGCGTTGACGCCAAAGGCCTGCTGAACCGCGCGCATGc > 2:553172/1‑150 (MQ=255) gcgcCTGGAAATCGCCGCCACCTGGCTGGCCGGTGGCCTGGACCCGGACAAGGTGACCTTCTATCGCCAGTCCGACATCCCGGAAATCCCCGAGCTGACCTGGCTGCTGACCTGCGTTGACGCCAAAGGCCTGCTGAACCGCGCGCATGc > 2:553138/1‑150 (MQ=255) cTGGAAATCGCCGCCACCTGGCTGGCCGGTGGCCTGGACCCGGACAAGGTGACCTTCTATCGCCAGTCCGACATCCCGGAAATCCCCGAGCTGACCTGGCTGCTGACCTGCGTTGCCGCCAAAGGCCTGCTGAACCgcgcgc > 2:402414/1‑142 (MQ=255) cTGGAAATCGCCGCCACCTGGCTGGCCGGTGGCCTGGACCCGGACAAGGTGACCTTCTATCGCCAGTCCGACATCCCGGAAATCCCCGAGCTGACCTGGCTGCTGACCTGCGTTGCCGCCAAAGGCCTGCTGAACCgcgcgc < 1:402414/142‑1 (MQ=255) ggAAATCGCCGCCACCTGGCTGGCCGGTGGCCTGGACCCGGACAAGGTGACCTTCTATCGCCAGTCCGACATCCCGGAAATCCCCGAGCTGACCTGGCTGCTGACCTGCGTTGCCGCCAAAGGCCTGCTGAACCGCGCGCATGCCTACaa < 2:13513/150‑1 (MQ=255) gAAATCGCCGCCACCTGGCTGGCCGGTGGCCTGGACCCGGACAAGGTGACCTTCTATCGCCAGTCCGACATCCCGGAAATCCCCGAGCTGACCTGGCTGCTGACCTGCGTTGCCGCCAAAGGCCTGCTGAACCGCGCGCATGCCTACAAg < 2:575912/150‑1 (MQ=255) aaTCGCCGCCACCTGGCTGGCCGGTGGCCTGGACCCGGACAAGGTGACCTTCTATCGCCCGTCCGACATCCCGGAAATCCTCGAGCTGACCTGGCTGCTGACCTGCGTTGCCGCCAAAGGCCTGCTGAACCGCGCGCATGCCTACAAGGc > 1:90581/1‑150 (MQ=255) cgccACCTGGCTGGCCGGTGGCCTGGACCCGGACAAGGTGACCTTCTATCGCCAGTCCGACATCCCGGAAATCCCCGAGCTGACCTGGCTGCTGACCTGCGTTGCCGCCAAAGGCCTGCTGAACCGCGCGCATGCCTACAAGGCCTCGGt < 1:674586/150‑1 (MQ=255) gccACCTGGCTGGCCGGTGGCCTGGACCCGGACAAGGTGACCTTCTATCGCCAGTCCGACATCCCGGAAATCCCCGAGCTGACCTGGCTGCTGACCTGCGTTGCCGCCAAAGGCCTGCTGAACCGCGCGCATGCCTACAAGGCCTCGGTg < 2:471458/150‑1 (MQ=255) cACCTGGCTGGCCGGTGGCCTGGACCCGGACAAGGTGACCTTCTATCGCCAGTCCGACATCCCGGAAATCCCCGAGCTGACCTGGCTGCTGACCTGCGTTGCCGCCAAAg < 2:193281/110‑1 (MQ=255) cACCTGGCTGGCCGGTGGCCTGGACCCGGACAAGGTGACCTTCTATCGCCAGTCCGACATCCCGGAAATCCCCGAGCTGACCTGGCTGCTGACCTGCGTTGCCGCCAAAg > 1:193281/1‑110 (MQ=255) cGGTGGCCTGGACCCGGACAAGGTGACCTTCTATCGCCAGTCCGACATCCCGGAAATCCCCGAGCTGACCTGGCTGCTGACCTGCGTTGACGCCAAAGGCCTGCTGAACCGCGCGCATGCCTACAAGGCCTCGGTGGACAAGAACGTCga < 1:553138/150‑1 (MQ=255) cGGTGGCCTGGACCCGGACAAGGTGACCCTCTATCGCCAGTCCGACATCCCGGAAATCCCCGAGCTGACCTGGCTGCTGACCTGCGTTGACGCCAAAGGCCTGCTGAACCGCGCGCATGCCTACAAGGCCTCGGTGGACAAGAACGTCga < 1:553172/150‑1 (MQ=255) ccGGACAAGGTGACCTTCTATCGCCAGTCCGACATCCCGGAAATCCCCGAGCTGACCTGGCTGCTGACCTGCGTTGCCGCCAAAGGCCTGCTGAACCGCGCGCATGCCTACAAGGCCTCGGTGGACAAGAACGTCGAGAACGGCGAAGAc > 1:534446/1‑150 (MQ=255) ggACAAGGTGACCTTCTATCGCCAGTCCGACATCCCGGAAATCCCCGAGCTGACCTGGCTGCTGACCTGCGTTGCCGCCAAAGGCCTGCTGAACCGCGCGCATGCCTACAAGGCCTCGGTGGACAAGAACGTCGAGAACGGCGAAGAccc > 2:232140/1‑150 (MQ=255) ttCTATCGCCAGTCCGACATCCCGGAAATCCCCGAGCTGACCTGGCTGCTGACCTGCGTTGCCGCCAAAGGCCTGCTGAACCGCGCGCATGCCTACAAGGCCTCGGTGGACAAGAACGTCGAGAACGGCGAAGACCCGGACGCCGGCGTg > 2:226929/1‑150 (MQ=255) aTCCCGGAAATCCCCGAGCTGACCTGGCTGCTGACCTGCGTTGCCGCCAAAGGCCTGCTGAACCGCGCGCATGCCTACAAGGCCTCGGTGGACAAGAACGTCGAGAACGGCGAAGACCCGGACGCCGGCGTGACGATGGGCCTGTTCAGc < 1:232140/150‑1 (MQ=255) ccGAGCTGACCTGGCTGCTGACCTGCGTTGCCGCCAAAGGCCTGCTGAACCGCGCGCATGCCTACAAGGCCTCGGTGGACAAGAACGTCGAGAACGGCGAAGACCCGGACGCCGGCGTGACGATGGGCCTGTTCAGCTACCCGGTGCTGa > 2:167112/1‑150 (MQ=255) gAGCTGACCTGGCTGCTGACCTGCGTTGCCGCCAAAGGCCTGCTGAACCGCGCGCATGCCTACAAGGCCTCGGTGGACAAGAACGTCGAGAACGGCGAAGACCCGGACGCCGGCGTGACGATGGGCCTGTTCAGCTACCCGGTGCTGATg > 2:589422/1‑150 (MQ=255) cTGGCTGCTGCCCTACATCGGCGCCAAAGGCCTGCTGACCCGCGAGTATGCCTCCAAGGCCTCGGTGGACAAGAACGTCGAGAACGGCGAAGCCCCGGACGCCGGCGTGACGATGGGCCTGTTCAGCTACCCGGTGCTGATGGCCGCCGa < 1:115410/150‑1 (MQ=255) cTGGCTGCTGACCTGCGTTGCCGCCAAAGGCCTGCTGAACCGCGCGCATGCCTACAAGGCCTCGGTGGACAAGAACGTCGAGAACGGCGAAGACCCGGACGCCGGCGTGACGATGGGCCTGTTCAGCTACCCGGTGCTGATGGCCGCCGa < 1:351526/150‑1 (MQ=255) ggCTGCTGACCTGCGCGGCCGCCAAAGGCCTGCTGACCCGCGCGCATGCCTACAAGGCCTCGGTGGACAAGAACGTCGAGAACGGCGAAGACCCGGACGCCGGCGTGACGATGGGCCTGTTCAGCTACCCGGTGCTGATGGCCGCCGata < 2:287728/150‑1 (MQ=255) tgctgACCTTCGTTGCCGCCAAAGGCCTGCTGAACCGCGCGCATGCCTACAAGGCCTCGGTGGACAAGAACGTCGAGAACGGCGAAGACCCGGACGCCGGCGTGACGATGGGCCTGt > 1:734334/1‑117 (MQ=255) tgctgACCTGCGTTGCCGCCAAAGGCCTGCTGAACCGCGCGCATGCCTACAAGGCCTCGGTGGACAAGAACGTCGAGAACGGCGAAGACCCGGACGCCGGCGTGACGATGGGCCTGt < 2:734334/117‑1 (MQ=255) cTGCGTTGCCGCCAAAGGCCTGCTGAACCGCGCGCATGCCTACAAGGCCTCGGTGGACAAGAACGTCGAGAACGGCGAAGACCCGGACGCCGGCGTGACGATGGGCCTGTTCAGCTACCCGGTGCTGATGGCCGCCGATATCCTGATGtt > 1:472397/1‑150 (MQ=255) gTTGCCGCCAAAGGCCTGCTGAACCGCGCGCATGCCTACAAGGCCTCGGTGGACAAGAACGTCGAGAACGGCGAAGACCCGGACGCCGGCGTGACGATGGGCCTGTTCAGCTACCCGGTGCTGATGGCCGCCGATATCCTGATGTTCAAc < 1:226929/150‑1 (MQ=255) | ACCCGCTGCGCATCCAGCGCTCGCGCCTGGAAATCGCCGCCACCTGGCTGGCCGGTGGCCTGGACCCGGACAAGGTGACCTTCTATCGCCAGTCCGACATCCCGGAAATCCCCGAGCTGACCTGGCTGCTGACCTGCGTTGCCGCCAAAGGCCTGCTGAACCGCGCGCATGCCTACAAGGCCTCGGTGGACAAGAACGTCGAGAACGGCGAAGACCCGGACGCCGGCGTGACGATGGGCCTGTTCAGCTACCCGGTGCTGATGGCCGCCGATATCCTGATGTTCAAC > NC_002947/1498238‑1498524 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |