Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,511,112 | T→A | 17.9% | pseudogene (497/1851 nt) | PP_1325 ← | putative lipoprotein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,511,112 | 0 | T | A | 17.9% | 63.3 / 8.6 | 28 | pseudogene (497/1851 nt) | PP_1325 | putative lipoprotein |
Reads supporting (aligned to +/- strand): ref base T (14/9); new base A (2/3); total (16/12) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.24e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.70e-01 |
TGCTCCAGGGTGCCGGCGCTTTTCACGGCGAAGGCCAGGCTGGTCCAGCCAGCCAGGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCAGGGCCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAGGTCTGCCGGCAGTTCGGCGAGGCGCTGCAGGCTGG > NC_002947/1510968‑1511253 | tgctCCAGGGTGCCGGCGCTTTTCACGGCGAAGGCCAGGCTGGTCCAGCCAGCCAGGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCGAGATGGCGTCATTGTTGGTGCTGGCGGCCTGgccg > 2:36132/1‑150 (MQ=255) tgctCCAGGGTGCCGGCGCTTTTCACGGCGAAGGCCAGGCTGGTCCAGCCAGCCAGGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGgccg > 1:627558/1‑150 (MQ=255) aGGGTGCCGGCGCTTTTCACGGCGAAGGCCAGGCTGGTCCAGCCAGCCAGGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCAGGCCGCCagca < 1:103125/150‑4 (MQ=255) cAGGCTGGTCCAGCCAGCCAGGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGAt < 2:664804/138‑1 (MQ=255) cAGGCTGGTCCAGCCAGCCAGGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGAt > 1:664804/1‑138 (MQ=255) tgcggggccagccagccagGGTCTGACCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCgg < 1:464149/143‑1 (MQ=255) gCTGGTCCAGCCAGCCAGGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGc > 2:734391/1‑150 (MQ=255) ccagccagccagGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCAg < 2:736124/150‑1 (MQ=255) cagccagccagGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCAgg < 1:734391/150‑1 (MQ=255) tgctgcAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCCGCCTGTCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCAGGGCCTGGCCACCGGCTTCGAGCgcggcggcg > 2:124166/1‑150 (MQ=255) cAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCAGGGCCTGGCCATCGGCTTCGAGCGCGGCGGCGTGcac > 2:159739/1‑150 (MQ=255) gTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCAGGGCCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCacac > 1:490650/1‑150 (MQ=255) tctGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCAGGGCCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAg > 2:112030/1‑150 (MQ=255) tctGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCAGGGCCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAg > 2:507429/1‑150 (MQ=255) ggcagCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCAGGGCCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTgcgc < 2:111528/150‑1 (MQ=255) gcagCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCAGGGCCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTgcgcg > 1:557318/1‑150 (MQ=255) cAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCAGGGCCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAGGTCTGc > 2:6489/1‑150 (MQ=255) aaGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCAGGGCCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAg < 1:73672/129‑1 (MQ=255) aaGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCAGGGCCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAg > 2:73672/1‑129 (MQ=255) cccAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCAGGGCCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAGGTCTGCCGGCa < 1:112030/150‑1 (MQ=255) cAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCAGGGCCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAGGTCTGCCGGCAGt < 2:490650/150‑1 (MQ=255) cttGGCGGCCAGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCAGGGCCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAGGTCTGCCGGCAGTTCGGCGAGGCGCTGCAgg > 2:115076/3‑148 (MQ=255) cttGGCGGCCAGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCAGGGCCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAGGTCTGCCGGCAGTTCGGCGAGGCGCTGCAgg < 1:115076/146‑1 (MQ=255) ttGGCGGCCAGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCAGGGCCTGGCCa < 2:543375/68‑1 (MQ=255) ttGGCGGCCAGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCAGGGCCTGGCCa > 1:543375/2‑69 (MQ=255) tGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCAGGGCCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAGGTCTGCCGGCAGTTCGGCGAGGCGCTGCAGGCTgg > 2:458492/1‑150 (MQ=255) gcCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCAGGGCCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGt > 2:548542/1‑98 (MQ=255) gcCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCAGGGCCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGt < 1:548542/98‑1 (MQ=255) | TGCTCCAGGGTGCCGGCGCTTTTCACGGCGAAGGCCAGGCTGGTCCAGCCAGCCAGGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCAGGGCCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAGGTCTGCCGGCAGTTCGGCGAGGCGCTGCAGGCTGG > NC_002947/1510968‑1511253 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |