Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,522,888 | C→T | 12.1% | R252C (CGT→TGT) | ftsW → | lipid II flippase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,522,888 | 0 | C | T | 12.1% | 82.3 / 4.1 | 33 | R252C (CGT→TGT) | ftsW | lipid II flippase |
Reads supporting (aligned to +/- strand): ref base C (15/14); new base T (2/2); total (17/16) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.11e-01 |
TGATGGTGGTGCTGGCGGTGCTGGCGGTATTTGTCCTGGTTCAGGCGCAGCCCTACCGGATGGCGCGCCTTATTACGTTCACCGACCCCTGGGCCGATCAGTTCGGCTCCGGCTACCAGCTGACCCAGGCACTGATCGCCTTCGGCCGTGGCGAGTGGCTGGGCGTTGGCCTGGGCAACAGCGTGCAGAAGCAGTTCTACCTGCCTGAAGCGCACACCGACTTCGTGTTCTCGGTCCTGGCGGAAGAACTGGGCGTGGTCGGCTCGCT > NC_002947/1522742‑1523009 | tGATGGTGGTGCTGGCGGTGCTGGCGGTATTTGTCCTGGTTCAGGCGCAGCCCTACCGGATGGCGCGCCTTATTACGTTCACCGACCCCTGGGCCGATCAGTTCGGCTCCGGCTACCAGCTGACCCAGGCACTGATCGCCTTCGGCCGTg > 1:370077/1‑150 (MQ=255) gATGGTGGTGCTGGCGGTGCTGGCGGTATTTGTCCTGGTTCAGGCGCAGCCCTACCGGATGGCGCGCCTTATTACGTTCACCGACCCCTGGGCCGATCAGTTCGGCTCCGGCTACCAGCTGACCCAGGCACTGATCGCCTTCGGCCGTgg < 2:370077/150‑1 (MQ=255) tgctggcggtATTTGTCCTGGTTCAGGCGCAGCCCTACCGGATGGCGCGCCTTATTACGTTCACCGACCCCTGGGCCGATCAGTTCGGCTCCGGCTACCAGCTGACCCAGGCACTGATCGCCTTCGGCCGTGGCGAGTGGCTGGGCGTTg < 1:657757/150‑1 (MQ=255) tggcggtATTTGTCCTGGTTCAGGCGCAGCCCTACCGGATGGCGCGCCTTATTACGTTCACCGACCCCTGGGCCGATCAGTTCGGCTCCGGCTACCAGCTGACCCAGGCACTGATCGCCTTCGGCCGTGGCGAGTGGCTGGGCGTTGGcc > 1:540498/1‑150 (MQ=255) cggtATTTGTCCTGGTTCAGGCGCAGCCCTACCGGATGGCGCGCCTTATTACGTTCACCGACCCCTTGGCCGATCAGTTCGGCTCCGGCTACCAGCTGACCCAGGCACTGATCGCCTTCGGCCGTGGCGAGTGGCTGGGCGTTGGCCTgg < 2:170719/150‑1 (MQ=255) aTTTGTCCTGGTTCAGGCGCAGCCCTACCGGATGGCGCGCCTTATTACGTTCACCGACCCCTGGGCCGATCAGTTCGGCTCCGGCTACCAGCTGACCCAGGCACTGATCGCCTTCGGCCGTGGCGAGTGGCTGGGCGTTGGCCTGGGCaa > 1:298668/1‑150 (MQ=255) gTCCTGGTTCAGGCGCAGCCCTACCGGATGGCGCGCCTTATTACGTTCACCGACCCCTGGGCCGATCAGTTCGGCTCCGGCTACCAGCTGACCCAGGCACTGATCGCCTTCGGCCGTGGCGAGTGGCTGGGCGTTGGCCTGGGCAACAGc < 1:27875/150‑1 (MQ=255) cTGGTTCAGGCGCAGCCCTACCGGATGGCGCGCCTTATTACGTTCACCGACCCCTGGGCCGATCAGTTCGGCTCCGGCTACCAGCTGACCCAGGCACTGATCGCCTTCGGCCGTGGCGAGTGGCTGGGCGTTGGCCTGGGCAACAGCGTg < 1:184867/150‑1 (MQ=255) cTACCGGATGGCGCGCCTTATTACGTTCACCGACCCCTGGGCCGATCAGTTCGGCTCCGGCTACCAGCTGACCCAGGCACTGATCGCCTTCGGCCGTGGCGAGTGGCTGGGCGTTGGCCTGGGCAACAGCGTGCAGAAGCAGTTCTAcct < 1:85481/150‑1 (MQ=255) cGGATGGCGCGCCTTATTACGTTCACCGACCCCTGGGCCGATCAGTTCGGCTCCGGCTACCAGCTGACCCAGGCACTGATCGCCTTCGGCCGTGGCGAGTGGCTGGGCGTTGGCCTGGGCAACAGCGTGCAGAAGCAGTTCTAcctgcct > 1:55663/1‑150 (MQ=255) cTTATTACGTTCACCGACCCCTGGGCCGATCAGTTCGGCTCCGGCTACCAGCTGACCCAGGCACTGATCGCCTTCGGCCGTGGCGAGTggtt > 2:460005/1‑90 (MQ=255) cTTATTACGTTCACCGACCCCTGGGCCGATCAGTTCGGCTCCGGCTACCAGCTGACCCAGGCACTGATCGCCTTCGGCCGTGGCGAGTggtt < 1:460005/92‑3 (MQ=255) attaCGTTCACCGACCCCTGGGCCGATCAGTTCGGCTCCGGCTACCAGCTGACCCAGGCACTGATCGCCTTCGGCCGTGGCGAGCGGCTGGGCGTTGGCCTGGGCAACAGCGTGCAGAAGCAGTTCTACCTGCCTGAAGCGCACACCGAc < 2:540498/150‑1 (MQ=255) ttaCGTTCACCGACCCCTGGGCCGATCAGTTCGGCTCCGGCTACCAGCTGACCCAGGCACTGATCGCCTTCGGCCGTGGCGAGTg < 2:695351/85‑1 (MQ=255) ttaCGTTCACCGACCCCTGGGCCGATCAGTTCGGCTCCGGCTACCAGCTGACCCAGGCACTGATCGCCTTCGGCCGTGGCGAGTg > 1:695351/1‑85 (MQ=255) ccGACCCCTGGGCCGATCAGTTCGGCTCCGGCTACCAGCTGACCCAGGCACTGATCGCCTTCGGCCGTGGCGAGTGGCTGGGCGTTGGCCTGGGCAACAGCGTGCAGAAGCAGTTCTACCTGCCTGAAGCGCACACCGACTTCGTGTtct > 2:426710/1‑150 (MQ=255) cccTGGGCCGATCAGTTCGGCTCCGGCTACCAGCTGACCCAGGCACTGATCGCCTTCGGCCGTGGCGAGTGGCTGGGCGTTGGCCTGGGCAACAGCGTGCAGAAGCAGTTCTACCTGCCTGAAGCGCACACCGACTTCGTGTTCTCGGTc > 2:330058/1‑150 (MQ=255) ttCGGCTCCGGCTACCAGCTGACCCAGGCACTGATCGCCTTCGGCCGTGGCGAGTGGCTGGGCGTTGGCCTGGGCAACAGCGTGCAGAAGCAGTTCTAcctgc < 1:491979/103‑1 (MQ=255) ttCGGCTCCGGCTACCAGCTGACCCAGGCACTGATCGCCTTCGGCCGTGGCGAGTGGCTGGGCGTTGGCCTGGGCAACAGCGTGCAGAAGCAGTTCTAcctgc > 2:491979/1‑103 (MQ=255) tCGGCTCCGGCTACCAGCTGACCCAGGCACTGATCGCCTTCGGCCGTGGCGAGTGGCTGGGCGTTGGCCTGGGCAACAGCGTGCAGAAGCAGTTCTACCTGCCTGAAGCGCACACCGACTTCGTGTTCTCGGTCCTGGCGGAAGAACTgg < 2:55663/150‑1 (MQ=255) ggCTACCAGCTGACCCAGGCACTGATCGCCTTCGGCCGTGGCGAGTGGCTGGGCGTTGGCCTGGGCAACAGCGTGCAGAAGCAGTTCTACCTGCCTGAAGCGCACACCGACTTCGTGTTCTCGGTCCTGGCGGAAGAACTGGGCGTGGTc > 1:103600/1‑150 (MQ=255) tACCAGCTGACCCAGGCACTGATCGCCTTCGGCCGTGGCGAGTGGCTGGGCGTTGGCCTGGGTAACAGCGTGCAGAAGCAGTTCTACCTGCCTGAAGCGCACACCGACTTCGTGTTCTCGGTCCTGGCGGAAGAACTGGGCGTGGTCGGc > 2:244898/1‑150 (MQ=255) aGCTGACCCAGGCACTGATCGCCTTCGGCCGTGGCGAGTGGCTGGGCGTTGGCCTGGGCAACAGCGTGCAGAAGCAGTTCTACCTGCCTGAAGCGCACACCGACTTCGTGTTCTCGGTCCTGGCGGAAGAACTGGGCGTg < 1:60749/140‑1 (MQ=255) aGCTGACCCAGGCACTGATCGCCTTCGGCCGTGGCGAGTGGCTGGGCGTTGGCCTGGGCAACAGCGTGCAGAAGCAGTTCTACCTGCCTGAAGCGCACACCGACTTCGTGTTCTCGGTCCTGGCGGAAGAACTGGGCGTg > 2:60749/1‑140 (MQ=255) gCTGACCCAGGCACTGATCGCCTTCGGCCGTGGCGAGTGGCTGGGCGTTGGCCTGGGCAACAGCGTGCAGAAGCAGTTCTACCTGCCTGAAGCGCACACCGACTTCGTGTTCTCGGTCCTGGCGGAAGAACTGGGCGTGGTCGGCTCgct > 2:714637/1‑150 (MQ=255) gACCCAGGCACTGATCGCCTTCGGCTGTGGCGAGTGGCTGGGCGTTGGCCTGGGCAACAGCGTGCAGAAGCAGTTCTACCTGCCTGAAGCGCACACCGACTTCgtg < 2:268957/106‑1 (MQ=255) gACCCAGGCACTGATCGCCTTCGGCTGTGGCGAGTGGCTGGGCGTTGGCCTGGGCAACAGCGTGCAGAAGCAGTTCTACCTGCCTGAAGCGCACACCGACTTCgtg < 2:125903/106‑1 (MQ=255) gACCCAGGCACTGATCGCCTTCGGCTGTGGCGAGTGGCTGGGCGTTGGCCTGGGCAACAGCGTGCAGAAGCAGTTCTACCTGCCTGAAGCGCACACCGACTTCgtg > 1:268957/1‑106 (MQ=255) gACCCAGGCACTGATCGCCTTCGGCTGTGGCGAGTGGCTGGGCGTTGGCCTGGGCAACAGCGTGCAGAAGCAGTTCTACCTGCCTGAAGCGCACACCGACTTCgtg > 1:125903/1‑106 (MQ=255) aCCCAGGCACTGATCGCCTTCGGCCGTGGCGAGTGGCTGGGCGTTGGCCTGGGCAACAGCGTGCAGAAGCAGTTCTACCTGCCTGAAGCGCACACCGACTTc > 2:429722/1‑102 (MQ=255) aCCCAGGCACTGATCGCCTTCGGCCGTGGCGAGTGGCTGGGCGTTGGCCTGGGCAACAGCGTGCAGAAGCAGTTCTACCTGCCTGAAGCGCACACCGACTTc < 1:429722/102‑1 (MQ=255) ccAGGCACTGATCGCCTTCGGCCGTGGCGAGTGGCTGGGCGTTGGCCTGGGCAACAGCGTGCAGAAGCAGTTCTACCTGCCTGAAGCGCacac < 2:279028/93‑1 (MQ=255) ccAGGCACTGATCGCCTTCGGCCGTGGCGAGTGGCTGGGCGTTGGCCTGGGCAACAGCGTGCAGAAGCAGTTCTACCTGCCTGAAGCGCacac > 1:279028/1‑93 (MQ=255) | TGATGGTGGTGCTGGCGGTGCTGGCGGTATTTGTCCTGGTTCAGGCGCAGCCCTACCGGATGGCGCGCCTTATTACGTTCACCGACCCCTGGGCCGATCAGTTCGGCTCCGGCTACCAGCTGACCCAGGCACTGATCGCCTTCGGCCGTGGCGAGTGGCTGGGCGTTGGCCTGGGCAACAGCGTGCAGAAGCAGTTCTACCTGCCTGAAGCGCACACCGACTTCGTGTTCTCGGTCCTGGCGGAAGAACTGGGCGTGGTCGGCTCGCT > NC_002947/1522742‑1523009 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |