Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,951,384 | A→C | 26.1% | intergenic (‑120/+41) | oguA ← / ← PP_2585 | 8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,951,384 | 0 | A | C | 26.1% | 33.8 / 13.0 | 23 | intergenic (‑120/+41) | oguA/PP_2585 | 8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase |
Reads supporting (aligned to +/- strand): ref base A (7/10); new base C (3/3); total (10/13) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GTTTTTGCAGGGTTTGTAGATGACATGGTGCAAGCCTGCGCAATACGCATCGGCGATTACCGATGTCATAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGC‑TCGAAGTGCCCGTGCCGGCCTCTTGGCGGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATCCCCAGCGGGTTAGCGTTTTTCAACGCATCCGGCAGCAGTGCGTCAGGGTAGTT > NC_002947/2951239‑2951523 | gTTTTTGCAGGGTTTGTAGATGACATGGTGCAAGCCTGCGCAATACGCATCGGCGATTACCGATGTCATAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGC‑TCGAAGTGCCCGTGCCGGCCTCTTGGCGGCTAGAGc < 1:43187/150‑1 (MQ=255) gCAGGGTTTGTAGATGACATGGTGCAAGCCTGCGCAATACGCATCGGCGATTACCGATGTCATAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGC‑TCGAAGTGCCCGTGCCGGCCTCTTGGCGGCTAGAGCCGCGaa < 1:689163/150‑1 (MQ=255) gggTTTGTAGATGACATGGTGCAAGCCTGCGCAATACGCATCGGCGATTACCGATGTCATAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGC‑TCGAAGTGCCCGTGCCGGCCTCTTGGCGGCTAGAGCCGCGAagag < 2:521179/150‑1 (MQ=255) gggTTTGTAGATGACATGGTGCAAGCCTGCGCAATACGCATCGGCGATTACCGATGTCATAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGC‑TCGAAGTGCCCGTGCCGGCCTCTTCGCGGCTCTAGCCGCCAagag < 1:28631/150‑1 (MQ=39) ggTTTGTAGATGACATGGTGCAAGCCTGCGCAATACGCATCGGCGATTACCGATGTCATAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGC‑TCGAAGTGCCCGTGCCGGCCTCTTGGCGGCTAGAGCCGCGAAGAgg > 1:343551/1‑150 (MQ=255) gTTTGTAGATGACATGGTGCAAGCCTGCGCAATACGCATCGGCGATTACCGATGTCATAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGC‑TCGAAGTGCCCGTGCCGGCCTCTTGGCGGCTa < 2:678367/135‑1 (MQ=255) gTTTGTAGATGACATGGTGCAAGCCTGCGCAATACGCATCGGCGATTACCGATGTCATAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGC‑TCGAAGTGCCCGTGCCGGCCTCTTGGCGGCTa > 1:678367/1‑135 (MQ=255) tttGTAGATGACATGGTGCAAGCCTGCGCAATACGCATCGGCGATTACCGATGTCATAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGC‑TCGAAGTGCCCGTGCCGGCCTCTTCGCGGCTCTAGCCGCCAagag < 1:365549/147‑1 (MQ=39) tttGTAGATGACATGGTGCAAGCCTGCGCAATACGCATCGGCGATTACCGATGTCATAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGC‑TCGAAGTGCCCGTGCCGGCCTCTTCGCGGCTCTAGCCGCCAagag > 2:365549/1‑147 (MQ=39) ttGTAGATGACATGGTGCAAGCCTGCGCAATACGCATCGGCGATTACCGATGTCATAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGC‑TCGAAGTGCCCGTGCCGGCCTCTTGGCGGCTAGAGCCGCGAAGAGGCCg < 1:268906/150‑1 (MQ=255) gATGACATGGTGCAAGCCTGCGCAATACGCATCGGCGATTACCGATGTCATAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGC‑TCGAAGTGCCCGTGCCGGCCTCTTGGCGGCTAGAGCCGCGAAGAGGCCGGCACg > 2:179235/1‑150 (MQ=255) aTGGTGCAAGCCTGCGCAATACGCATCGGCGATTACCGATGTCATAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGC‑TCGAAGTGCCCGTGCCGGCCTCTTGGCGGCTAGAGCCGCGAAGGGGCCGGCACGGGGTGc < 2:276542/150‑1 (MQ=255) gCAAGCCTGCGCAATACGCATCGGCAATTACCGATGGCAGATGCTCTCGGTATTGTACGCACGCTTTTTACTGAATGTGCCTGGCAGCG‑TTTTCCCAGGCCGGCCTCTTGGCGGCTAGAGCCGCGAAGAGGGCGGCGCGGGTTGCAGCCa > 1:545738/1‑150 (MQ=255) cATAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGC‑TCGAAGTGCCCGTGCCGGCCTCTTGGCGGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTc < 2:343551/150‑1 (MQ=255) ttGTAAGCAAGCTTTTTACTGATTGTATACAGC‑TCGAAGTACCCATGCCGGCCTCTTCGCGGCTCTAGCCGCCAagag < 2:89432/78‑1 (MQ=18) ttGTAAGCAAGCTTTTTACTGATTGTATACAGC‑TCGAAGTACCCATGCCGGCCTCTTCGCGGCTCTAGCCGCCAagag > 1:89432/1‑78 (MQ=18) aCTGATTGTATACAGC‑TCGAAGTGCCCGTGCCGGCCTCTTGGCGGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATCCCCAGCGGGTTAGCGt > 2:615814/1‑150 (MQ=255) tataCAGC‑TCGAAGTGCCCGTGCCGGCCTCTTGGCGGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCgg > 2:515401/1‑120 (MQ=255) tataCAGC‑TCGAAGTGCCCGTGCCGGCCTCTTGGCGGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCgg < 1:515401/120‑1 (MQ=255) tataCAGC‑TCGAAGTGCCCGTGCCGGCCTCTTGGCGGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATCCCCAGCGGGTTAGCGTTTTTCAAc < 1:179235/150‑1 (MQ=255) tCGAAGTGCCCGTGCCGGCCTCTTGGCGGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATCCCCAGCGGGTTAGCGt < 2:427286/134‑1 (MQ=255) tCGAAGTGCCCGTGCCGGCCTCTTGGCGGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATCCCCAGCGGGTTAGCGt > 1:427286/1‑134 (MQ=255) ccGTGCCGGCCTCTTGGCGGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATCCCCAGCGGGTTAGCGTTTTTCAACGCATCCGGCAGCAGTGc > 2:199009/1‑150 (MQ=255) ctctTCGCGGCTCTAGCCGCCAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATCCCCAGCGGGTTAGCGTTTTTCAACGCATCCGGCAGCAGTGCGTCAGGGTAg > 1:581689/1‑150 (MQ=39) ctTGGCGGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATCCCCAGCGGGTTAGCGTTTTTCAACGCATCCGGCAGCAGTGCGTCAGTGTAGtt < 2:46493/150‑1 (MQ=255) | GTTTTTGCAGGGTTTGTAGATGACATGGTGCAAGCCTGCGCAATACGCATCGGCGATTACCGATGTCATAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGC‑TCGAAGTGCCCGTGCCGGCCTCTTGGCGGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATCCCCAGCGGGTTAGCGTTTTTCAACGCATCCGGCAGCAGTGCGTCAGGGTAGTT > NC_002947/2951239‑2951523 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |