Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,126,899 | G→C | 13.3% | A190G (GCC→GGC) | PP_2744 ← | ribose‑phosphate pyrophosphokinase family protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,126,899 | 0 | G | C | 13.3% | 85.6 / 6.1 | 30 | A190G (GCC→GGC) | PP_2744 | ribose‑phosphate pyrophosphokinase family protein |
Reads supporting (aligned to +/- strand): ref base G (14/12); new base C (2/2); total (16/14) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.90e-01 |
GCGTCTGCCCCGTGCTGATCAGGTCGTCGAATACGATGACGGTGCTGCCTGCCACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCCAGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAGGCGTTGGGCGAATAGCTGGGTGCATTGCAGGTTCCAGCTCGGGATTCGGTAG > NC_002947/3126750‑3127036 | gcGTCTGCCCCGTGCTGACCAGGTCGTCGAATACGATGACGGTGCTGCCTGCCACGGTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCCAGCAGGTGCGCCAggg > 2:275096/1‑150 (MQ=255) ccGTGCTGATCAGGTCGTCGAATACGATGACGGTGCTGCCTGCCACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCCAGCAGGTGCGCCAGGCCCTg < 2:406224/145‑1 (MQ=255) ccGTGCTGATCAGGTCGTCGAATACGATGACGGTGCTGCCTGCCACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCCAGCAGGTGCGCCAGGCCCTg > 1:406224/1‑145 (MQ=255) tCAGGTCGTCGAATACGATGACGGTGCTGCCTGCCACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCCAGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCgg > 1:642001/1‑150 (MQ=255) gttgAATACGATGACGGTGCTGGCTGCCACGTTACCGACCAGTTGTTCGCCGGTCAGGCCTGGCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCCAGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGttt > 2:592849/4‑150 (MQ=255) cgAATACGATGACGGTGCTGCCTGCCACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCCAGCAGGTTCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGa < 1:325930/150‑1 (MQ=255) gAATACGATGACGGTGCTGCCTGCCACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCCAGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGAc < 1:185029/150‑1 (MQ=255) tgccACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCCAGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCggc < 2:515018/145‑2 (MQ=255) tgccACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCCAGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCggc > 1:515018/1‑144 (MQ=255) aCGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCCAGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGAcc < 2:642001/150‑1 (MQ=255) ccGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCCAGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGAcc < 1:498597/150‑1 (MQ=255) ctgcctgcTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCCAGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCa > 1:181061/1‑150 (MQ=255) cctgcTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCCAGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAGGc < 1:361767/150‑1 (MQ=255) ctgctgGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCCAGCAGGTGAGATAGGGCCTGGAGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGGGACACGACAGTGAGAGTGTGGTGACGGAGTAGCGGGGCGAgggg > 1:321629/1‑148 (MQ=255) ctgGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCCAGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAGGCGTTg < 1:667931/150‑1 (MQ=255) ctgGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCCAGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAGGCGTTg < 1:275096/150‑1 (MQ=255) ccATCATGGCCACCGAGACCGGTCGCGCCAGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAGGCGTTGGGCGAATAGCTggg > 1:736017/1‑150 (MQ=255) ccATCATGGCCACCGAGACCGGTCGCGCCAGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAGGCGTTGGGCGAATAGCTggg > 2:537946/1‑150 (MQ=255) ccATCATGGCCACCGAGACCGGTCGCGCCAGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAGGCGTTGGGCGAATAGCTggg > 2:537898/1‑150 (MQ=255) cGAGACCGGTCGCGCCAGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAGGCGTTGGGCGAATAGCTGGGTGCATTGCAGGtt > 2:537300/1‑150 (MQ=255) gagaCCGGTCGCGCCAGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAGGCGTTGGGCGAATAGCTGGGTGCATTGCAGGTTc > 2:490731/1‑150 (MQ=255) aCCGGTCGCGCCAGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCg < 2:313845/70‑1 (MQ=255) aCCGGTCGCGCCAGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCg > 1:313845/1‑70 (MQ=255) aCCGGTCGCGCCAGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAGGCGTTGGGCGAATAGCTGGGTGCATTGCAGGTTCCAg < 2:362497/150‑1 (MQ=255) gTCGCGCCAGCAGGTGCGCCAGGGCCTGGCGAAACTGCGCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAGGCGTTGGGCGAATAGCTGGGTGCATTGCAGGTTCCAGCTCg > 2:434839/1‑150 (MQ=255) ccAGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAGGCGTTGGGCGAATAGCTGGGTGCAt < 2:368843/128‑1 (MQ=255) ccAGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAGGCGTTGGGCGAATAGCTGGGTGCAt > 1:368843/1‑128 (MQ=255) ccAGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAGGCGTTGGGCGAATAGCTGGGTGCATTGCAGGTTCCAGCTCGGGATTc > 2:263104/1‑150 (MQ=255) agGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAGGCGTTGGGCGAATAGCTGGGTGCATTGCAGGTTCCAGCTCGGGATTCGGTAg < 2:181061/150‑1 (MQ=255) ccAGGCCCTGGCGCACCTGCT‑GGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAGGCGTTGGGCGAATAGCTGGGTGCATTGCAGGTTCCAGCTCGGGATTCGGTa > 2:224490/1‑141 (MQ=255) ccAGGCCCTGGCGCACCTGCT‑GGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAGGCGTTGGGCGAATAGCTGGGTGCATTGCAGGTTCCAGCTCGGGATTCGGTa < 1:224490/141‑1 (MQ=255) | GCGTCTGCCCCGTGCTGATCAGGTCGTCGAATACGATGACGGTGCTGCCTGCCACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCCAGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAGGCGTTGGGCGAATAGCTGGGTGCATTGCAGGTTCCAGCTCGGGATTCGGTAG > NC_002947/3126750‑3127036 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |