Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,129,843 | C→A | 30.3% | P349P (CCC→CCA) | dmoA‑I → | dimethyl‑sulfide monooxygenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,129,843 | 0 | C | A | 30.3% | 16.7 / 4.1 | 14 | P349P (CCC→CCA) | dmoA‑I | dimethyl‑sulfide monooxygenase |
Reads supporting (aligned to +/- strand): ref base C (3/6); new base A (2/2); total (5/9) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.34e-01 |
TGGCGCTGATCTCGGGATGGACGGGTATCGACTTCGGTCAGTACCGGCCCGACCAGGTGCTCAAGCATATCCATACCAATGCCATTCAGTCGGCAGTGGAAACCTTTTCCACCGCCGACCCCGACAAGCAATGGACGGTGCAGGAACTGGCCGATTGGGTTGGTATTGGCGGCTTCGGCCCGTTGATCGTCGGCAGTGCGCAGACCGTCGCCGACGAGCTGCAGGCCTGGGTCGAGGAAACCGACGTGGACGGCTTCAACCTGGCTTAC > NC_002947/3129722‑3129990 | tggcgctgATCTCGGGATGGACGGGTATCGACTTCGGTCAGTACCGGCCCGACCAGGTGCTCAAGCATATCCATACCAATGCCATTCAGTCGGCAGTGGAAACCTTTTCCACCGCCGACCTGAACGAGCAATGGACGGTGCAGGAACTgg < 1:19901/150‑1 (MQ=255) tcGGGATGGACGGGTATCGACTTCGGTCAGTACCGGCCCGACCAGGTGCTCAAGCATATCCATACCAATGCCATTCAGTCGGCAGTGGAAACCTTTTCCACCGCCGACCCAGACAAGCAATGGACGGTGCAgg > 1:132234/1‑133 (MQ=255) tcGGGATGGACGGGTATCGACTTCGGTCAGTACCGGCCCGACCAGGTGCTCAAGCATATCCATACCAATGCCATTCAGTCGGCAGTGGAAACCTTTTCCACCGCCGACCCAGACAAGCAATGGACGGTGCAgg < 2:132234/133‑1 (MQ=255) tcGGGATGGACGGGTATCGACTTCGGTCAGTACCGGCCCGACCAGGTGCGCAAGCATATCCATACCAATGCCATTCAGTCGGCAGTGGAAACCTTTTCCACGGCCGACCCCGACAAGCAATGGACGGTGCCGGAACTCGCCGGTTGGGtt > 2:49060/1‑150 (MQ=255) tCGGTCAGTACCGGCCCGACCAGGTGCTCAAGCATATCCATACCAATGCCATTCAGTCGGCAGTGGAAACCTTTTCCACCGCCGACCCCGACAAGCAATGGACGGTGCAGGAACTGGCCGATTGGGTTGGTATTGGCGGCTTCGGCCCGt < 2:452708/150‑1 (MQ=255) ggTGCTCAAGCATATCCATACCAATGCCATTCAGTCGGCAGTGGAAACCTTTTCCACCGCCGACCCCGACAAGCAATGGACGGTGCAGGAACTGGCCGATTGGGTTGGTATTGGCGGCTTCGGCCCGTTGATCGTCGGCAGTGCGCAGAc < 2:692004/150‑1 (MQ=255) tCCATACCAATGCCATTCAGTCGGCAGTGGAAACCTTTTCCACCGCCGACCCCGACAAGCAATGGACGGTGCAGGAACTGGCCGATTGGGTTGGTATTGGCGGCTTCGGCCCGTTGATCGTCGGCa > 1:587712/1‑126 (MQ=255) tCCATACCAATGCCATTCAGTCGGCAGTGGAAACCTTTTCCACCGCCGACCCCGACAAGCAATGGACGGTGCAGGAACTGGCCGATTGGGTTGGTATTGGCGGCTTCGGCCCGTTGATCGTCGGCa < 2:587712/126‑1 (MQ=255) aTACCAATGCCATTCAGTCGGCAGTGGAAACCTTTTCCACCGCCGACCCAGACAAGCAATGGACGGTGCAGGAACTGGCCGATTGGGTTGGTATTGGCGGCTTCGGCCCGTTGATCGTCGGCAGTGCGCAGACCGTc > 1:378161/1‑137 (MQ=255) aTACCAATGCCATTCAGTCGGCAGTGGAAACCTTTTCCACCGCCGACCCAGACAAGCAATGGACGGTGCAGGAACTGGCCGATTGGGTTGGTATTGGCGGCTTCGGCCCGTTGATCGTCGGCAGTGCGCAGACCGTc < 2:378161/137‑1 (MQ=255) cGGCAGTGGAAACCTTTTCCACCGCCGACCCCGACAAGCAATGGACGGTGCAGGAACTGGCCGATTGGGTTGGTATTGGCTGCTTCGGCCCGTTGATCGTCGGCAGTGCGCAGACCGTCGCCGACGAGCTGCAGGCCTGGGTCGAGGaaa < 2:546668/150‑1 (MQ=255) tgAAACCCTTTCCACCGCCGACCCCGACAAGCAATGGACGGTGCAGGAACTGGCCGATTGGGTTGGTATTGCGGTCTTCGGCCCGTTGATCGTCGGCAGTGCGCAGACCGTCGCCGACGAGCTGCAGGCCTGGGTCGAGGAAACCGACGt < 1:49060/149‑1 (MQ=255) cTTTTCCACCGCCGACCCCGACAAGCAATGGACGGTGCAGGAACTGGCCGATTGGGTTGGGATTGGCGGCTTCGGCCCGTTGATCGTCGGCAGTGCGCAGACCGTCGCCGACGAGCTGCAGGCCTGGGTCGAGGAAACCGACGTGGACgg > 1:280833/1‑150 (MQ=255) aCCGCCGACCCCGACAAGCAATGGACGGTGCAGGAACTGGCCGATTGGGTTGGTATTGGCGGCTTCGGCCCGTTGATCGTCGGCAGTGCGCAGACCGTCGCCGACGAGCTGCAGGCCTGGGTCGAGGAAACCGACGTGGACGGCTTCAAc < 2:280833/150‑1 (MQ=255) cccGACAAGCAATGGACGGTGCAGGAACTGGCCGATTGGGTTGGTATTGGCGGCTTCGGCCCGTTGATCGTCGGCAGTGCGCAGACCGTCGCCGACGAGCTGCAGGCCTGGGTCGAGGAAACCGACGTGGACGGCTTCAACCTGGCTTAc > 2:198250/1‑150 (MQ=255) | TGGCGCTGATCTCGGGATGGACGGGTATCGACTTCGGTCAGTACCGGCCCGACCAGGTGCTCAAGCATATCCATACCAATGCCATTCAGTCGGCAGTGGAAACCTTTTCCACCGCCGACCCCGACAAGCAATGGACGGTGCAGGAACTGGCCGATTGGGTTGGTATTGGCGGCTTCGGCCCGTTGATCGTCGGCAGTGCGCAGACCGTCGCCGACGAGCTGCAGGCCTGGGTCGAGGAAACCGACGTGGACGGCTTCAACCTGGCTTAC > NC_002947/3129722‑3129990 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |