Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,498,534 | C→T | 16.6% | L121L (CTG→CTA) | PP_5563 ← | membrane protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,498,534 | 0 | C | T | 16.6% | 47.6 / 2.9 | 24 | L121L (CTG→CTA) | PP_5563 | membrane protein |
Reads supporting (aligned to +/- strand): ref base C (10/10); new base T (2/2); total (12/12) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.83e-01 |
TTGCCTTGCATGGCCAATTGTCGTTGATGTAATGATCCGGCTTGAAGCACACCCGTTCATCGTTGACCCAGAACATCTGCCAACCGGAGCCCGAGATCCTGAGCTTCGGGCACGACCAGTAGTCCTTTGCCGAAAGCGTGGCTGTGGTCAGCGCAATCATTGTCGGAGCAACGATAACCATCAGCACAACTGTCAGTTGCAGCGAGCGTAGCTGGAACCCATGCAGCCAAGAGGTTTTTGGTGGGTCAAACTTTCGACCGGTCCATGCGGCGATCAGGCTGGCAACGATCA > NC_002947/3498386‑3498676 | ttGCCTTGCACTGCCAATTTTCGTTGATGTAATGATCCGGCTTGAAGCACACCCGTTCATCGTTGACCCAGAACATCTTCCAACCGGAGCCCGAGATCCTGAGCTTCGGGCACGACCAGTAGTCCTTTGCCGAAAGCGTGGCTGTGGTCa < 2:25533/150‑1 (MQ=255) ggCCAATTGTCGTTGATGTAATGATCCGGCTTGAAGCACACCCGTTCATCGTTGACCCAGAACATCTGCCAACCGGAGCCCGAGATCCTGAGCTTCGGGCACGACCAGTAGTCCTTTGCCGAAAGCGTGGCTGTGGTCAGCGCAATCAtt > 2:93939/1‑150 (MQ=255) gCCAATTGTCGTTGATGTAATGATCCGGCTTGAAGCACACCCGTTCATCGTTGACCCAGAACATCTGCCAACCGGAGCCCGAGATCCTGAGCTTCGGGCACGACCAGTAGTCCTTTGCCGAAAGCGTGGCTGTGGTCAGCGCAATCATTg > 1:258838/1‑150 (MQ=255) ccAATTGTCGTTGATGTAATGATCCGGCTTGAAGCACACCCGTTCATCGTTGACCCAGAACATCTGCCAACCGGAGCCCGAGATCCTGAGCTTCGGGCACGACCAGTAGTCCTTTGCCGAAAGCGTGGCTGTGGTCAGCGCAATCAtt < 1:456769/148‑1 (MQ=255) ccAATTGTCGTTGATGTAATGATCCGGCTTGAAGCACACCCGTTCATCGTTGACCCAGAACATCTGCCAACCGGAGCCCGAGATCCTGAGCTTCGGGCACGACCAGTAGTCCTTTGCCGAAAGCGTGGCTGTGGTCAGCGCAATCAtt > 2:456769/1‑148 (MQ=255) cAATTGTCGTTGATGTAATGATCCGGCTTGAAGCACACCCGTTCATCGTTGACCCAGAACATCTGCCAACCGGAGCCCGAGATCCTGAGCTTCGGGCACGACCAGTAGTCCTTTGCCGAAAGCGTGGCTGTGGTCAGCGCAATCATTGTc < 1:532747/150‑1 (MQ=255) aaTTGTCGTTGATGTAATGATCCGGCTTGAAGCACACCCGTTCATCGTTGACCCAGAACATCTGCCAACCGGAGCCCGAGATCCTGAGCTTCGGGCACGACCAGTAGTCCTTTGCCGAAAGCGTGGCTGTGGTCAGCGCAATCATTGTCg < 2:258838/150‑1 (MQ=255) aaNGATCCGGCTTGAAGCACACCCGTTNATCGTTGACCCANAACATCNGNCAACCGGAGCCCGAGATCCTGAGCTTCGGGCACGACCAGTAGTCCTTTGTCGAAAGCGTAGCTGTGGTCAGCGCAATCATTGTCGGAGCAACGATAACCa > 1:498979/1‑150 (MQ=255) tGATCCGGCTTGAAGCACACCCGTTCATCGTTGACCCAGAACATCTGCCAACCGGAGCCCGAGATCCTGAGCTTCGGGCACGACCAGTAGTCCTTTGCCGAAAGCGTGGCTGTGGTCAGCGCAATCATTGTCGGAGCAACGATAACCATc < 2:463381/150‑1 (MQ=255) cccGTTCATCGTTGACCCAGAACATCTGCCAACCGGAGCCCGAGATCCTGAGCTTCGGGCACAACCAGTAGACCTTTCACTAAAGCGTGGCGCTAGGCAGCTCAATCATTGTCGGAGCAACGATAACCATCAGCACAACTGTCAGTTGCa < 1:91375/150‑1 (MQ=255) tCGTTGACCCAGAACATCTGCCAACCGGAGCCCGAGATCCTGAGCTTCGGGCACGACCAGTAGTCCTTTGCCGAAAGCGTGGCTGTGGTCAGCGCAATCa < 1:263585/100‑1 (MQ=255) tCGTTGACCCAGAACATCTGCCAACCGGAGCCCGAGATCCTGAGCTTCGGGCACGACCAGTAGTCCTTTGCCGAAAGCGTGGCTGTGGTCAGCGCAATCa > 2:263585/1‑100 (MQ=255) gTTGACCCAGAACATCTGCCAACCGGAGCCCGAGATCCTGAGCTTCGGGCACGACCAGTAGTCCTTTGCCGAAAGCGTGGCTGTGGTCAGCGCAATCATTGTCGGAGCAACGATAACCATCAGCACAACTGTCAGTTGCAGCGAGCGTAg > 1:68078/1‑150 (MQ=255) aaCATCTGCCAACCGGAGCCCGAGATCCTGAGCTTCGGGCACGACCAGTAGTCCTTTGCCGAAAGCGTGGCTGTGGTCAGCGCAATCCTTCTGGGAGCAACGATAACCATCAGCACAACTGTCAGTTGCAGCGAGCGTAGCTGGAACCCa < 2:290269/150‑1 (MQ=255) tGCCAACCGGAGCCCGGGATCCTGAGCTTCGGGCACGACCAGTAGTCCTTTGCCGAAAGCGTGGCTGTGGTCAGCGCAATCATTGTCGGAGCAACGATAACCATCAGCACAACTGTCAGTTGCAGCGAGCGTAGCTGGAACCCATGCAGc > 2:728149/1‑150 (MQ=255) ccAACCGGAGCCCGAGATCCTGAGCTTCGGGCACGACCAGTAGTCCTTTGCCGAAAGCGTGGCTGTGGTCAGCGCAATCATTGTCGGAGCAACGATAACCATCAGCACAACTGTCAGTTGCAGCGAGCGTAGCTGGAACCCATGCa < 1:507722/146‑1 (MQ=255) ccAACCGGAGCCCGAGATCCTGAGCTTCGGGCACGACCAGTAGTCCTTTGCCGAAAGCGTGGCTGTGGTCAGCGCAATCATTGTCGGAGCAACGATAACCATCAGCACAACTGTCAGTTGCAGCGAGCGTAGCTGGAACCCATGCa > 2:507722/1‑146 (MQ=255) aaCCGGAGCCCGAGATCCTGAGCTTCGGGCACGACCAGTAGTCCTTTGCCGAAAGCGTGGCTGTGGTTAGCGCAATCATTGt > 2:31591/1‑82 (MQ=255) aaCCGGAGCCCGAGATCCTGAGCTTCGGGCACGACCAGTAGTCCTTTGCCGAAAGCGTGGCTGTGGTTAGCGCAATCATTGt < 1:31591/82‑1 (MQ=255) tagtCCTTTGCCGAAAGCGTGGCTGTGGTTAGCGCAATCATTGTCGGAGCAACGATAACCATCAGCACAACTGTCAGTTGCAGCGAGCGTAGCTGGAACCCATGCAGCCAAGAGG‑TTTTGGTGGGTCAAACTTTCGACCGGTCCATgcgg > 2:594524/1‑150 (MQ=255) gAAAGCGTGGCTGTGGTCAGCGCAATCATTGTCGGAGCAACGATAACCATCAGCACAACTGTCAGTTGCAGCGAGCGTAGCTGGAACCCATGCAGCCAAGAGGTTTTTGGTGGGTCAAACTTTCGACCGGTCCATGCGGCGATCAGGCTg > 1:497379/1‑150 (MQ=255) gAAAGCGTGGCTGTGGTCAGCGCAATCATTGTCGGAGCAACGATAACCATCAGCACAACTGTCAGTTGCAGCGAGCGTAGCTGGAACCCATGCAGCCAAGAGGTTTTTGGTGGGTCAAACTTTCGACCGGTCCATGCGGCGATCAGGCTg > 2:56489/1‑150 (MQ=255) aaaGCGTGGCTGTGGTCAGCGCAATCATTGTCGGAGCAACGATAACCATCAGCACAACTGTCAGTTGCAGCGAGCGTAGCTGGAACCCATGCAGCCAAGAGGTTTTTGGTGGGTCAAACTTTCGACCGGTCCATGCGGCGATCAGGCTgg < 1:93939/150‑1 (MQ=255) gCTGTGGTTAGCGCAATCATTGTCGGAGCAACGATAACCATCAGCACAACTGTCAGTTGCAGCGAGCGTAGCTGGAACCCATGCAGCCAAGAGG‑TTTTGGTGGGTCAAACTTTCGACCGGTCCATGCGGCGATCAGGCTGGCAACGATCa < 1:594524/150‑1 (MQ=255) | TTGCCTTGCATGGCCAATTGTCGTTGATGTAATGATCCGGCTTGAAGCACACCCGTTCATCGTTGACCCAGAACATCTGCCAACCGGAGCCCGAGATCCTGAGCTTCGGGCACGACCAGTAGTCCTTTGCCGAAAGCGTGGCTGTGGTCAGCGCAATCATTGTCGGAGCAACGATAACCATCAGCACAACTGTCAGTTGCAGCGAGCGTAGCTGGAACCCATGCAGCCAAGAGGTTTTTGGTGGGTCAAACTTTCGACCGGTCCATGCGGCGATCAGGCTGGCAACGATCA > NC_002947/3498386‑3498676 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |