Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,726,459 | C→A | 13.8% | Q357K (CAA→AAA) | PP_3291 → | metallo‑beta‑lactamase family protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,726,459 | 0 | C | A | 13.8% | 77.5 / 3.4 | 29 | Q357K (CAA→AAA) | PP_3291 | metallo‑beta‑lactamase family protein |
Reads supporting (aligned to +/- strand): ref base C (13/12); new base A (2/2); total (15/14) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.05e-01 |
CGATGAGTCCAGGCACCTGGACCAGCTGCGCGAGCCCGCAGTGATCATCGCCGCCAGCGGCATGGCGACCGGCGGACGGGTGCTTCACCACCTGAAGGCACTGGCCCCAAACCCGCGCAACAGCATTCTGTTCTCCGGCTTTCAAGCCGGGGGGACGCGGGGTGCCGATATCGTCGCGGGCGCCCACAGTGTGCGGTTGCACGGCGAGGATGTGCCTATCCGTGCACAGGTGCATGCGATGGAGAATCTTTCTGCGCACGCCGATGCTGATGAAATCATGGAATG > NC_002947/3726317‑3726601 | cGATGAGTCCAGGCACCTGGACCAGCTGCGCGAGCCCGCAGTGATCATCGCCGCCAGCGGCATGGCGACCGGCGGACGGGTGCTTCACCACCTGAAGGCACTGGCCCCAAACCCGCGCAACAGCATTCTGTTCTCCGGCTTTCAAGCCgg < 1:77053/150‑1 (MQ=255) cAGGCACCTGGACCAGCTGCGCGAGCCCGCAGTGATCATCGCCGCCAGCGGCATGGCGACCGGCGGACGGGTGCTTCACCACCTGAAGGCACTGGCCCCAAACCCGCGCAACAGCATTCTGTTCTCCGGCTTTCAAGCCGGGGGGAcgcg > 1:739532/1‑150 (MQ=255) gCACCTGGACCAGCTGCGCGAGCCCGCAGTGATCATCGCCGCCAGCGGCATGGCGACCGGCGGACGGGTGCTTCACCACCTGAAGGCACTGGCCCCAAACCCGCGCAACAGCATTCTGTTCTCCGGCTTTCaa < 2:547475/133‑1 (MQ=255) gCACCTGGACCAGCTGCGCGAGCCCGCAGTGATCATCGCCGCCAGCGGCATGGCGACCGGCGGACGGGTGCTTCACCACCTGAAGGCACTGGCCCCAAACCCGCGCAACAGCATTCTGTTCTCCGGCTTTCaa > 1:547475/1‑133 (MQ=255) gCACCTGGACCAGCTGCGCGAGCCCGCAGTGATCATCGCCGCCAGCGGCATGGCGACCGGCGGACGGGTGCTTCACCACCTGAAGGCACTGGCCCCAAACCCGCGCAACAGCATTCTGTTCTCCGGCTTTCAAGCCGGGGGGACGCgggg > 1:557276/1‑150 (MQ=255) aCCAGCTGCGCGAGCCCGCAGTGATCATCGCCGCCAGCGGCATGGCGACCGGCGGACGGGTGCTTCACCACCTGAAGGCACTGGCCCCAAACCCGCGCAACAGCATTCTGTTCTCCGGCTTTCAAGCCGGGGGGACGCGGGGTGCCGata < 1:667003/150‑1 (MQ=255) cAGCTGCGCGAGCCCGCAGTGATCATCGCCGCCAGCGGCATGGCGACCGGCGGACGGGTGCTTCACCACCTGAAGGCACTGGCCCCAAACCCGCGCAACAGCATTCTGTTCTCCGGCTTTCAAGCCGGGGGGACGCGGGGTGCCGATAtc > 2:305361/1‑150 (MQ=255) cTGCGCGAGCCCGCAGTGATCATCGCCGCCAGCGGCATGGCGACCGGCGGACGGGTGCTTCACCACCTGAAGGCACTGGCCCCAAACCCGCGCAACAGCATTCTGTTCCCCGGCTTGAAAGCCggagaa > 1:297169/1‑125 (MQ=255) cTGCGCGAGCCCGCAGTGATCATCGCCGCCAGCGGCATGGCGACCGGCGGACGGGTGCTTCACCACCTGAAGGCACTGGCCCCAAACCCGCGCAACAGCATTCTGTTCCCCGGCTTGAAAGCCggagaa < 2:297169/129‑5 (MQ=255) gAGCCCGCAGTGATCATCGCCGCCAGCGGCATGGCGACCGGCGGACGGGTGCTTCACCACCTGAAGGCACTGGCCCCAAACCCGCGCAACAGCATTCTGTTCTCCGGCTTTCAAGCCggg < 1:416268/120‑1 (MQ=255) gAGCCCGCAGTGATCATCGCCGCCAGCGGCATGGCGACCGGCGGACGGGTGCTTCACCACCTGAAGGCACTGGCCCCAAACCCGCGCAACAGCATTCTGTTCTCCGGCTTTCAAGCCggg > 2:416268/1‑120 (MQ=255) gCCCGCAGTGATCATCGCCGCCAGCGGCATGGCGACCGGCGGACGGGTGATTCACCCACTTGAGGCACTGACCCGAAACCCGCGCAACAGCATTCTGTTCTCCGGCTTTCAAGCCGGGGGGACGCGGGGTGCCGATATCGTCGCGGgcgc > 1:467710/1‑150 (MQ=255) cGCAGTGATCATCGCCGCCAGCGGCATGGCGACCGGCGGACGGGTGCTTCACCACCTGAAGGCACTGGCCCCAAACCCGCGCAACAGCATTCTGTTCTCCGGCTTCCAAGCCGGGGGGACGCGGGGTGCCGATATCGTCGCGGGCGCCca < 1:394638/150‑1 (MQ=255) gccAGCCGTATGGCGACCGGCGCACGGGTGCTTCACCGCCTGAAGGCACTGGCCCCAAACCCGCGCAAAAGCATTCTGTTCTCCGGCTTTCAAGCCGGGGGGACGGGGGGTGCCGATATCGTCGCGGGCGCCCACAGTGTGCGGTTGCAc < 2:557276/150‑1 (MQ=255) aGCGGCATGGCGACCGGCGGACGGGTGCTTCACCACCTGAAGGCACTGGCCCCAAACCCGCGCAACAGCATTCTGTTCTCCGGCTTTCAAGCCGGGGGGACGCGGGGTGCCGATATCGTCGCGGGCGCCCACAGTGTGCGGTTGCACGGc > 2:662475/1‑150 (MQ=255) gCTTCACCACCTGAAGGCACTGGCCCCAAACCCGCGCAACAGCATTCTGTTCTCCGGCTTTCAAGCCGGGGGGACGCGGGGTGCCGATATCGTCGCGGGCGCCCACAGTGTGCGGTTGCACGGCGAGGATGTGCCTATCCGTGCACAGGt < 2:116708/150‑1 (MQ=255) ggCCCCAAACCCGCGCAACAGCATTCTGTTCTCCGGCTTTCAAGCCGGGGGGACGCGGGGTGCCGATATCGTCGCGGGCGCCCACAGTGTGCGGTTGCACGGCGAGGATGTTCCTATCCGTGCACAGGTGCATGCGATGGAGAATCTTTc < 2:102865/150‑1 (MQ=255) ccAAACCCGCGCAACAGCATTCTGTTCTCCGGCTTTCAAGCCGGGGGGACGCGGGGTGCCGATATCGTCGCGGGCGCCCACAGTGTGc < 2:17504/88‑1 (MQ=255) ccAAACCCGCGCAACAGCATTCTGTTCTCCGGCTTTCAAGCCGGGGGGACGCGGGGTGCCGATATCGTCGCGGGCGCCCACAGTGTGc > 1:17504/1‑88 (MQ=255) ttCTGTTCTCCGGCTTTCAAGCCGGGGGGACGCGGGGTGCCGATATCGTCGCGGGCGCCCACAGTGTGCGGTTGCACGGCGAGGATGTGCCTATCCGTGCACAGGTGCATGCGATGGAGAATCTTTCTGCGCACGCCGATGCTGATGaaa > 1:405955/1‑150 (MQ=255) cTGTTCTCCGGCTTTCAAGCCGGGGGGACGCGGGGTGCCGATATCGTCGCGGGCGCCCACAGTGTGCGGTTGCACGGCGAGGATGTGCCTATCCGTGCACAGGTGCATGCGATGGAGAATCTTTCTGCGCACGCCGATGCTGATGAAATc > 2:421203/1‑150 (MQ=255) tGTTCTCCGGCTTTCAAGCCGGGGGGACGCGGGGTGCCGATATCGTCGCGGGCGCCCACAgtgt > 1:641961/1‑64 (MQ=255) tGTTCTCCGGCTTTCAAGCCGGGGGGACGCGGGGTGCCGATATCGTCGCGGGCGCCCACAgtgt < 2:641961/64‑1 (MQ=255) ttCTCCGGCTTTCAAGCCGGGGGGACGCGGGGTGCCGATATCGTCGCGGGCGCCCACAGTGTGCGGTTGCACGGCGAGGATGTGCCTATCCGTGCACAGGTGCATGCGATGGAGAATCTTTCTGCGCACGCCGATGCTGATGAAATCATg > 1:692213/1‑150 (MQ=255) cccccGGCTTGAAAGCCGGAGGGACGCGGGGTGCCGATATCGTCGCGGGCGCCCACAGTGTGCGGTTGCACGGCGAGGATGTGCCTATCCGTGCACAGGTGCATGCGATGGAGAATCTTTTTGCGTATGCCGATGCTAATGAAAGCATgg > 2:282933/4‑150 (MQ=255) tcCGGCTTTCAAGCCGGGGGGACGCGGGGTGCCGATATCGTCGCGGGCGCCCACAGTGTGCGGTTGCACGGCGAGGATGTGCCTATCCGTGCACAGGTGCATGCGATGGAGAATCTTTCTGCGCACGc > 1:561057/1‑128 (MQ=255) tcCGGCTTTCAAGCCGGGGGGACGCGGGGTGCCGATATCGTCGCGGGCGCCCACAGTGTGCGGTTGCACGGCGAGGATGTGCCTATCCGTGCACAGGTGCATGCGATGGAGAATCTTTCTGCGCACGc < 2:561057/128‑1 (MQ=255) ccGGCTTGAAAGCCGGAGGGACGCGGGGTGCCGATATCGTCGCGGGCGCCCACAGTGTGCGGTTGCACGGCGAGGATGTGCCTATCCGTGCACAGGTGCATGCGATGGAGAATCTTTCTGCGCACGCCGATGCTGATGAAATCATGGAAt < 1:282933/150‑1 (MQ=255) cGGCTTTCAAGCCGGGGGGACGCGGGGTGCCGATATCGTCGCGGGCGCCCACAGTGTGCGGTTGCACGGCGAGGATGTGCCTATCCGTGCACAGGTGCATGCGATGGAGAATCTTTCTGCTCACGCCGATGCTGATGAAATCATGGAATg < 2:262628/150‑1 (MQ=255) | CGATGAGTCCAGGCACCTGGACCAGCTGCGCGAGCCCGCAGTGATCATCGCCGCCAGCGGCATGGCGACCGGCGGACGGGTGCTTCACCACCTGAAGGCACTGGCCCCAAACCCGCGCAACAGCATTCTGTTCTCCGGCTTTCAAGCCGGGGGGACGCGGGGTGCCGATATCGTCGCGGGCGCCCACAGTGTGCGGTTGCACGGCGAGGATGTGCCTATCCGTGCACAGGTGCATGCGATGGAGAATCTTTCTGCGCACGCCGATGCTGATGAAATCATGGAATG > NC_002947/3726317‑3726601 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |